Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0110
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 125 3e-29
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 2e-22
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 98 5e-21
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 37 0.011
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 29 2.1
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11) 28 6.4
SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08) 27 8.5
SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22) 27 8.5
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 125 bits (301), Expect = 3e-29
Identities = 57/93 (61%), Positives = 71/93 (76%)
Frame = +3
Query: 258 IGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFR 437
I CEV+ S DS ++HLAW N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ R
Sbjct: 114 INCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALR 173
Query: 438 GLFIIDDKQNLRQITINDLPVGRSWRRPCGLVQ 536
GLFIIDDK LRQITINDLPVGRS L+Q
Sbjct: 174 GLFIIDDKGILRQITINDLPVGRSVDETLRLIQ 206
Score = 100 bits (240), Expect = 8e-22
Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 4/74 (5%)
Frame = +1
Query: 46 KVFSFNKMPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 213
++ SF++ + T KPAP F TAV +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39 RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98
Query: 214 TEIIAFSEKADEFR 255
TEIIAFS++ DEF+
Sbjct: 99 TEIIAFSDRVDEFK 112
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 102 bits (245), Expect = 2e-22
Identities = 43/60 (71%), Positives = 55/60 (91%)
Frame = +1
Query: 76 QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 255
Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55 QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = +3
Query: 438 GLFIIDDKQNLRQITINDLPVGRSWRRPCGLVQ 536
GLFIIDDK LRQIT+NDLPVGRS LVQ
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQ 167
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 258 IGCEVLGASTDSHFTHLAW 314
I EV+G S DS FTHLAW
Sbjct: 116 INTEVVGCSVDSVFTHLAW 134
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 97.9 bits (233), Expect = 5e-21
Identities = 46/73 (63%), Positives = 57/73 (78%)
Frame = +3
Query: 318 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 497
N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ RGLFIIDDK LRQITINDLP
Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62
Query: 498 VGRSWRRPCGLVQ 536
VGRS L+Q
Sbjct: 63 VGRSVDETLRLIQ 75
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 368 KRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRPARGEVVEETLRAGAG-RS 544
KR V L R+ + G+ H + R L HRRQ + QR R + + LR G RS
Sbjct: 1817 KRPVVIRLGRVYT-GKRARHVIRRKLRHRRQVNRRRRRRQRSRRRKAIRRILRRRFGRRS 1875
Query: 545 SXTDKHGR 568
++HGR
Sbjct: 1876 RRINRHGR 1883
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/69 (28%), Positives = 26/69 (37%)
Frame = +2
Query: 335 GRTRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRPARGEVVE 514
G HE SD + R G+ H R HHRRQ + H+R E
Sbjct: 898 GGMMEHELQSDSQISQETGARENDPGKKHKHRHRRHHHHRRQHNRKIKKHRRKHSARKHE 957
Query: 515 ETLRAGAGR 541
LR G+ +
Sbjct: 958 RRLRKGSDK 966
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +2
Query: 326 AQAGRTRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRPARG 502
+ AG + +R+ A H PR+ G G+ H +P + +P + P +G
Sbjct: 18 SSAGEESLADSGEGRRENARHKPRVMIGGEGEKHSVPAVITIPSVTDPGVAEGRPPRKG 76
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +2
Query: 356 HPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRPARGEVVEETLRAGA 535
+P D R++ H +G G P+ R RQ + ADHHQR ++ E + L A
Sbjct: 586 YPHDGRRLFAH-SLSDDSGTRQGCPIQRHGQPGRQLQTIADHHQR-SQSEAMCPGLGVDA 643
Query: 536 GRSSXTDKHG 565
SS + G
Sbjct: 644 RFSSWCNSWG 653
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 341 TRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQ 487
T SH+ P + + P ++ + HP H QA P+A HH+
Sbjct: 799 TSSHDMPRTSMPLVSYPPHMKKSPFVVHHPPDSASRHGNQA-PEAHHHE 846
>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
Length = 334
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 372 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TIND 491
D ++ Y V+D+ET I GL I +K+N +++ T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316
>SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)
Length = 416
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 4 ASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK 165
+S SPVLSV + V S + +Q T P F AT + G F D L+ GK
Sbjct: 206 SSRSPVLSVTDGIA-VQSSSTESVQPTLILPPFTATGLHTGSFYDDCLAVLSGK 258
>SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22)
Length = 651
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 243 GRVPKIGCEVLGASTDSHFTHLAWINTPRKQGG 341
G ++ +++G+ +DSH T L N PR Q G
Sbjct: 476 GTTARVYIQLIGSISDSHTTELRDANRPRFQRG 508
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526,412
Number of Sequences: 59808
Number of extensions: 369937
Number of successful extensions: 1301
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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