Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0108
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 123 1e-29
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 68 7e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 55 5e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 3e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.003
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.17
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.17
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 0.90
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 2.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 2.7
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.7
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|... 25 4.8
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.3
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 8.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 24 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 123 bits (297), Expect = 1e-29
Identities = 63/112 (56%), Positives = 70/112 (62%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 264
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 265 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPK 113
Score = 103 bits (248), Expect = 9e-24
Identities = 44/46 (95%), Positives = 44/46 (95%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP L
Sbjct: 59 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCL 104
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 67.7 bits (158), Expect = 7e-13
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 258
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
Score = 56.8 bits (131), Expect = 1e-09
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVL 392
Q+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+L
Sbjct: 63 QNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLL 109
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 54.8 bits (126), Expect = 5e-09
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 91 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEARA 261
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 48.0 bits (109), Expect = 6e-07
Identities = 15/46 (32%), Positives = 34/46 (73%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +L
Sbjct: 59 EAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKIL 104
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.8 bits (111), Expect = 3e-07
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 276 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 383
+L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
Score = 42.7 bits (96), Expect = 2e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 252
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 189
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 36.3 bits (80), Expect = 0.002
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 273 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
+ +K I +G V NWD +W + +L+ P EHP+L
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPIL 102
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 37.1 bits (82), Expect = 0.001
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 252
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
Score = 24.2 bits (50), Expect = 8.4
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +3
Query: 297 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
+GI+ +W+ W +L+V P E+ ++
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMM 105
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 198
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 33.5 bits (73), Expect = 0.014
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 389
P E +++NWD ME++ +TF +L + EHP+
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPI 118
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.17
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -3
Query: 320 IPVSDDSVFDGVFEGQDTSFALASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 141
+P + +V +TSFAL ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 140 PALHIP 123
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.17
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 245 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 84
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 0.90
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 247 LLHKSPSVPYRPSRPDGGAFPRSRGTR 167
L+ K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 248 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 132
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 148 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 252
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 130 TYRSHCLLPTRQLLRRTS*ISEI 62
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTF 350
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 177
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 259 LWPHLLHKSPSVPYRPSRPDGGAFPRSRGT 170
LWP + + P++PS+ D G GT
Sbjct: 19 LWPLWIDTHVTAPFKPSKNDPGVLIDKYGT 48
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAG 150
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 8.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 270 ILTLKYPIEHGIVTN 314
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 8.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 309 TNWDDMEKIWHHTFYNELRVAPEEHP 386
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 368 RPRGTPSPASLRLPS 412
RPR +PSP+ L +PS
Sbjct: 356 RPRRSPSPSHLSIPS 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,539
Number of Sequences: 5004
Number of extensions: 40396
Number of successful extensions: 127
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -