Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0105
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.51 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 105  SVPSHRSNITARVTCSSPPLKIQNQ 179
            S  S+ +N+T  +T   PP+K+Q+Q
Sbjct: 951  SSASNVTNVTTNLTTILPPVKVQSQ 975


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 588 YTMGSGGLVKKIPLC*RAYPPKSPIM 665
           +TM   G+++ IPL     P K+P M
Sbjct: 357 FTMSEDGMIEVIPLSAIPEPSKNPAM 382


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 1   PPPATCHHIVFIVIYNKLLNKILSKHETSYAARAPACHHTD 123
           PP  T + +V+I    KL N I  K       +    HH D
Sbjct: 85  PPNRTINSVVYIEHLTKLNNAIEEKRFELTNRKGVVFHHDD 125


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 SAAKDSKPNVWWSLNGERLGTFNG 226
           SAA +  P V W+L+G  L T NG
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NG 466


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 SAAKDSKPNVWWSLNGERLGTFNG 226
           SAA +  P V W+L+G  L T NG
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NG 466


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/42 (19%), Positives = 24/42 (57%)
 Frame = +1

Query: 403 YTTDKAMGHP*XVFVIDTRTIDETVSGQAPILKWETQIQRLL 528
           ++T K++  P  +F++     D  ++ + P+L   + ++R++
Sbjct: 82  FSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERMI 123


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 1   PPPATCHHIVFIVIYNKLLNKILSKHETSYAARAPACHH 117
           PP  T + +V+I    KL N +  K       +    HH
Sbjct: 206 PPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKGVVFHH 244


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/42 (19%), Positives = 24/42 (57%)
 Frame = +1

Query: 403 YTTDKAMGHP*XVFVIDTRTIDETVSGQAPILKWETQIQRLL 528
           ++T K++  P  +F++     D  ++ + P+L   + ++R++
Sbjct: 82  FSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERMI 123


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 268 INLITGGGDSSCRLWDLETG 327
           IN+I    D+  RLW ++TG
Sbjct: 110 INIIRVRVDACDRLWGVDTG 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,270
Number of Sequences: 438
Number of extensions: 4872
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)