Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0103
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    28   0.063
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   5.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.3  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   9.6  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 0.063
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +2

Query: 599 LQDVYXIGGIGTV 637
           LQDVY IGGIGTV
Sbjct: 1   LQDVYKIGGIGTV 13


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 630 PIPPIXYTSCKGKTXGA 580
           PIP I YT  + KT G+
Sbjct: 248 PIPYIQYTETETKTWGS 264


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -1

Query: 476 PRPFWLKAPTCCLRAIQKWARKRQQLGCSQSS*CMRIL 363
           P     ++  CC  A+      RQ +  S+   C+R +
Sbjct: 605 PHRLAARSRRCCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -1

Query: 476 PRPFWLKAPTCCLRAIQKWARKRQQLGCSQSS*CMRIL 363
           P     ++  CC  A+      RQ +  S+   C+R +
Sbjct: 497 PHRLAARSRRCCYHAVAPGTDIRQSIALSRKKKCIRYM 534


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 415  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 287
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 415  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 287
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 522 NASLKLSMAILPPARPHLNKPLXSSPCKTYTKS 620
           NA  +++ + L P R   + P  SSP  T + S
Sbjct: 50  NAISQITNSTLDPGRKSPSSPRISSPSSTKSGS 82


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 131 QRFHQEHDHRNLS 169
           + FH+EHD R  S
Sbjct: 260 RHFHEEHDTRRAS 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,848
Number of Sequences: 336
Number of extensions: 4093
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)