BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0103 (695 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 89 3e-18 SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 84 9e-17 SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 80 2e-15 SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 33 0.22 SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29 SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.39 SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.1 SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54) 29 4.8 SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08) 28 6.3 SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 28 6.3 SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 6.3 SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 SB_27431| Best HMM Match : HEAT (HMM E-Value=2.4) 28 8.3 >SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) Length = 123 Score = 89.0 bits (211), Expect = 3e-18 Identities = 38/64 (59%), Positives = 49/64 (76%) Frame = +3 Query: 63 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 242 +D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60 Query: 243 TREH 254 TREH Sbjct: 61 TREH 64 >SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) Length = 322 Score = 84.2 bits (199), Expect = 9e-17 Identities = 37/39 (94%), Positives = 38/39 (97%) Frame = +3 Query: 54 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 170 GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ Sbjct: 22 GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60 Score = 37.5 bits (83), Expect = 0.010 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = +1 Query: 1 GSXKYAWVLDKLKAERE 51 GS KYAWVLDKLKAERE Sbjct: 4 GSFKYAWVLDKLKAERE 20 Score = 33.5 bits (73), Expect = 0.17 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +2 Query: 530 IEALDGHPATCPPPLEQA-PXVFPLQDVYXIGGIGTV 637 + +G + PP P PLQDVY IGGIGTV Sbjct: 85 VTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGGIGTV 121 Score = 32.7 bits (71), Expect = 0.29 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Frame = +3 Query: 471 PWFKGWQVERKE--GKLTENAS----LKLSMAILPPARPHLNKPLXSSPCKTYTKSVVLV 632 PWFK W +ER + K NAS + +ILPP+RP PL P + K + Sbjct: 62 PWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPS-GLPL-RLPLQDVYKIGGIG 119 Query: 633 PWPVGXVETWV 665 PVG VET V Sbjct: 120 TVPVGRVETGV 130 >SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) Length = 547 Score = 79.8 bits (188), Expect = 2e-15 Identities = 32/67 (47%), Positives = 47/67 (70%) Frame = +3 Query: 54 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 233 G T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266 Query: 234 NGQTREH 254 GQTREH Sbjct: 267 GGQTREH 273 Score = 55.6 bits (128), Expect = 4e-08 Identities = 23/49 (46%), Positives = 37/49 (75%) Frame = +2 Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 400 ++LA T GVK L++ VNKMD ++E R+EEIK +++ ++KK+G+NP Sbjct: 274 AMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322 >SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 359 Score = 33.1 bits (72), Expect = 0.22 Identities = 12/52 (23%), Positives = 26/52 (50%) Frame = +3 Query: 54 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209 GI++ ++ F + I+D PGH+DF ++ + D ++++ G Sbjct: 64 GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115 >SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 545 Score = 32.7 bits (71), Expect = 0.29 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +3 Query: 105 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209 +T ID PGH F G + D VL+VAA G Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112 >SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) Length = 240 Score = 32.3 bits (70), Expect = 0.39 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = +3 Query: 54 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 200 GIT I + + + +D PGH F G D +++VAA Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171 >SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) Length = 783 Score = 29.9 bits (64), Expect = 2.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 111 IIDAPGHRDFIKNMITGTSQADCAVLIV 194 IID PGH F G+S D A+L+V Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709 >SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54) Length = 901 Score = 28.7 bits (61), Expect = 4.8 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -2 Query: 553 RMAIESFNEAFSVSFPSLRSTCHPLNQGHFG*RLQHVVSVPSRNGHESDSSWV 395 R AI + N +S+ +S+ P +Q R V++P HES SW+ Sbjct: 846 RRAIPTRNARRDISYGDSQSSSEPASQSQN--RSSSPVNIPDDGDHESQRSWL 896 >SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08) Length = 231 Score = 28.3 bits (60), Expect = 6.3 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -3 Query: 330 YGGSVESILFTPTMSCLTPRVKASKDA 250 Y S+ SILF P +SCL +K+S DA Sbjct: 84 YKSSLGSILFLPAVSCL--EIKSSSDA 108 >SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 833 Score = 28.3 bits (60), Expect = 6.3 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +3 Query: 99 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209 + + +ID+PGH DF + D A+++V +G Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135 >SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) Length = 541 Score = 28.3 bits (60), Expect = 6.3 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +3 Query: 114 IDAPGHRDFIKNMITGTSQADCAVLIVA 197 +D PGH + M+ G + D A+L++A Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIA 96 >SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1516 Score = 28.3 bits (60), Expect = 6.3 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +2 Query: 32 N*RLSVXRYHNRYCSLEVRN 91 N +L + RYH+RY SLEV N Sbjct: 867 NPQLVMSRYHSRYVSLEVEN 886 >SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3112 Score = 28.3 bits (60), Expect = 6.3 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = +2 Query: 314 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 454 ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113 >SB_27431| Best HMM Match : HEAT (HMM E-Value=2.4) Length = 195 Score = 27.9 bits (59), Expect = 8.3 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = -3 Query: 342 LGSLYGGSVESILFTPTMSCLTPRVKASKD 253 + L+GG+ E ++ T +SCL ++ S D Sbjct: 104 VAELFGGACEDVMSTANISCLAEALECSDD 133 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,557,608 Number of Sequences: 59808 Number of extensions: 510063 Number of successful extensions: 1404 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1402 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1817559367 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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