Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0101
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    28   1.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   2.5  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   4.4  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    26   4.4  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   4.4  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   5.8  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   7.7  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   7.7  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 386 RSYHYLLSASYFNNYQTNREGFAKSSGNYRTIRG 487
           R  HY       NNY+  REG   + G YR  RG
Sbjct: 79  RGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRG 112


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 115 KAVLSTYVKRTCYFFENS 168
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 307 QRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREVFRKLSDDSW 486
           +R+ R     P  SE   G S T F          + L+++PD+QG I      L  +S+
Sbjct: 20  RRLSRSSTITPSVSEYRSGFSKTAFGN--------IELEEIPDKQGNITRATSNLESNSY 71

Query: 487 EKTI 498
            K +
Sbjct: 72  PKAL 75


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 313 VLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREVFRKLSDDSWE 489
           ++R IQ Q      T   S  V      L+   L  Q+ P E+GR+  +F+  S+ +W+
Sbjct: 1   MIRTIQRQ----SATRFSSALVQRRLYSLASDSLNKQRKPQEEGRLARIFKDPSNKAWK 55


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 430 PDEQGRIREVFRKLSDDSWEKTIGLISTSLRGV 528
           PD    + E+ + L   SW+    L+STS +G+
Sbjct: 41  PDSLNDLSEISKNLYISSWKTASELVSTSDKGI 73


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 170 H*INRIKYEGVCSHRCL-SGSGCAGRGRLSYQNVDQGC 280
           H I+R++ +GVC  RCL   +  A    + Y  ++ GC
Sbjct: 446 HAISRVEAQGVCVDRCLFQLASLAYEFLVRYGYINYGC 483


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +3

Query: 33  NYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK 176
           NYN+   C   H D   L +A CA  CK     +   H     EF TK
Sbjct: 16  NYNIWIDCDPGHDDVVALTLAACAGHCK--ILGVSTVHGNTTLEFTTK 61


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 268 DVLIAESSSASTPRARQATM 209
           D+L+A+ S+  TP++R A M
Sbjct: 657 DILVADPSTTVTPKSRDAVM 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,613
Number of Sequences: 5004
Number of extensions: 53439
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)