Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0101
(685 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40622-1|AAC50339.1| 334|Homo sapiens XRCC4 protein. 33 1.3
BT007216-1|AAP35880.1| 310|Homo sapiens X-ray repair complement... 33 1.3
BC016314-1|AAH16314.1| 336|Homo sapiens X-ray repair complement... 33 1.3
BC005259-1|AAH05259.1| 310|Homo sapiens XRCC4 protein protein. 33 1.3
AY940097-1|AAX14046.1| 334|Homo sapiens X-ray repair complement... 33 1.3
AF055285-2|AAD47297.1| 334|Homo sapiens DNA repair protein XRCC... 33 1.3
AF055285-1|AAD47298.1| 336|Homo sapiens DNA repair protein XRCC... 33 1.3
AB017445-1|BAB20668.1| 336|Homo sapiens XRCC4 protein. 33 1.3
L07868-1|AAB59446.1| 1308|Homo sapiens receptor tyrosine kinase ... 30 6.7
BC112199-1|AAI12200.1| 1308|Homo sapiens v-erb-a erythroblastic ... 30 6.7
AK128666-1|BAC87560.1| 167|Homo sapiens protein ( Homo sapiens ... 30 6.7
AC105921-1|AAY24303.1| 552|Homo sapiens unknown protein. 30 6.7
AB209697-1|BAD92934.1| 892|Homo sapiens v-erb-a erythroblastic ... 30 6.7
>U40622-1|AAC50339.1| 334|Homo sapiens XRCC4 protein.
Length = 334
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
SWEKT+ G + T G WT V+ + + +E G +G L KAL
Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74
>BT007216-1|AAP35880.1| 310|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 4 protein.
Length = 310
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
SWEKT+ G + T G WT V+ + + +E G +G L KAL
Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74
>BC016314-1|AAH16314.1| 336|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 4 protein.
Length = 336
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
SWEKT+ G + T G WT V+ + + +E G +G L KAL
Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74
>BC005259-1|AAH05259.1| 310|Homo sapiens XRCC4 protein protein.
Length = 310
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
SWEKT+ G + T G WT V+ + + +E G +G L KAL
Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74
>AY940097-1|AAX14046.1| 334|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 4 protein.
Length = 334
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
SWEKT+ G + T G WT V+ + + +E G +G L KAL
Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74
>AF055285-2|AAD47297.1| 334|Homo sapiens DNA repair protein XRCC4
protein.
Length = 334
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
SWEKT+ G + T G WT V+ + + +E G +G L KAL
Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74
>AF055285-1|AAD47298.1| 336|Homo sapiens DNA repair protein XRCC4
protein.
Length = 336
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
SWEKT+ G + T G WT V+ + + +E G +G L KAL
Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74
>AB017445-1|BAB20668.1| 336|Homo sapiens XRCC4 protein.
Length = 336
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
SWEKT+ G + T G WT V+ + + +E G +G L KAL
Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74
>L07868-1|AAB59446.1| 1308|Homo sapiens receptor tyrosine kinase
protein.
Length = 1308
Score = 30.3 bits (65), Expect = 6.7
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = +2
Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277
+ HT N +FS I I NR EG VC+H C S GC G G + +
Sbjct: 468 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 526
Query: 278 CRRTLSLPHCSAYYGQFKD 334
R + + C+ Y G+F++
Sbjct: 527 SRGRICIESCNLYDGEFRE 545
>BC112199-1|AAI12200.1| 1308|Homo sapiens v-erb-a erythroblastic
leukemia viral oncogene homolog 4 (avian) protein.
Length = 1308
Score = 30.3 bits (65), Expect = 6.7
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = +2
Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277
+ HT N +FS I I NR EG VC+H C S GC G G + +
Sbjct: 468 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 526
Query: 278 CRRTLSLPHCSAYYGQFKD 334
R + + C+ Y G+F++
Sbjct: 527 SRGRICIESCNLYDGEFRE 545
>AK128666-1|BAC87560.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ46826 fis, clone UTERU2014998. ).
Length = 167
Score = 30.3 bits (65), Expect = 6.7
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 169 PLNKSHQI*RCMLSSLPVWLWVCWPRKTQLSERRPRMQTDFKSAALQRVLRPIQ 330
P+ Q C +S P+W+W+C P + ++ RPR+ SA+ +V+ P Q
Sbjct: 35 PMTIRKQNGSCPSTSCPLWVWLCHPSWSAVA--RPRLAA--ASASWAQVILPPQ 84
>AC105921-1|AAY24303.1| 552|Homo sapiens unknown protein.
Length = 552
Score = 30.3 bits (65), Expect = 6.7
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = +2
Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277
+ HT N +FS I I NR EG VC+H C S GC G G + +
Sbjct: 327 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 385
Query: 278 CRRTLSLPHCSAYYGQFKD 334
R + + C+ Y G+F++
Sbjct: 386 SRGRICIESCNLYDGEFRE 404
>AB209697-1|BAD92934.1| 892|Homo sapiens v-erb-a erythroblastic
leukemia viral oncogene homolog 4 variant protein.
Length = 892
Score = 30.3 bits (65), Expect = 6.7
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = +2
Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277
+ HT N +FS I I NR EG VC+H C S GC G G + +
Sbjct: 68 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 126
Query: 278 CRRTLSLPHCSAYYGQFKD 334
R + + C+ Y G+F++
Sbjct: 127 SRGRICIESCNLYDGEFRE 145
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,430,443
Number of Sequences: 237096
Number of extensions: 1985179
Number of successful extensions: 3784
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3784
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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