Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0101
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.6  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   6.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 413 SYFNNYQTNREGFAKSSGNYRTIRGRKPLVS 505
           +Y NN++T+     + SG  + +    P+VS
Sbjct: 41  NYINNFETSNGISHQESGQPKQVDNETPVVS 71


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 380 LKRSYHYLLSASYFNNYQTN 439
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 380 LKRSYHYLLSASYFNNYQTN 439
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 380 LKRSYHYLLSASYFNNYQTN 439
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 380 LKRSYHYLLSASYFNNYQTN 439
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 380 LKRSYHYLLSASYFNNYQTN 439
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 380 LKRSYHYLLSASYFNNYQTN 439
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 380 LKRSYHYLLSASYFNNYQTN 439
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 347 ANELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKSSGNY 472
           + E K ++SL    +Y Y    S +NNY  N   +   + NY
Sbjct: 309 SKEPKIISSL--SNNYKY----SNYNNYNNNYNNYNNYNNNY 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,670
Number of Sequences: 438
Number of extensions: 3907
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)