Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0101
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60270.1 68418.m07554 lectin protein kinase family protein co...    31   0.71 
At1g68670.1 68414.m07846 myb family transcription factor contain...    29   3.8  
At3g45440.1 68416.m04905 lectin protein kinase family protein co...    28   6.6  
At5g51440.1 68418.m06377 23.5 kDa mitochondrial small heat shock...    27   8.8  
At2g40240.1 68415.m04948 pentatricopeptide (PPR) repeat-containi...    27   8.8  

>At5g60270.1 68418.m07554 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 668

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 223 WLWVCWPRKTQLSERRPRMQTDFKSAALQRVLR 321
           W+  CW R + +  R PR+ T+F S  +++VL+
Sbjct: 557 WVSECWKRSSLIDARDPRL-TEFSSQEVEKVLK 588


>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +1

Query: 244 RKTQLSERRPRMQTDFKSAALQRVLRPIQG-----QPRCSERTEGI-SLTVFETFLPLSP 405
           +K Q+ +R   +  +  + A++   + + G       +CSE+T  +    VFE F+P+  
Sbjct: 26  KKIQVFQRELPLCLELVTQAIEACRKELSGTTTTTSEQCSEQTTSVCGGPVFEEFIPIKK 85

Query: 406 VGLLLQQLPDEQ 441
           +  L +++ +E+
Sbjct: 86  ISSLCEEVQEEE 97


>At3g45440.1 68416.m04905 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and PS00108: Serine/Threonine protein
           kinases active-site signature, PROSITE:PS00108
          Length = 669

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 223 WLWVCWPRKTQLSERRPRMQTDFKSAALQRVLR 321
           W+  CW   + L  R PRM+ +  +  ++ VL+
Sbjct: 555 WVCECWKMASLLGARDPRMRGEISAEEVEMVLK 587


>At5g51440.1 68418.m06377 23.5 kDa mitochondrial small heat shock
           protein (HSP23.5-M) similar to heat shock 22 kDa
           protein, mitochondrial precursor SP:Q96331 from
           [Arabidopsis thaliana]; identified in Scharf, K-D., et
           al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 210

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 483 VGENHWSHKHVTKRGGKMDFSSH 551
           V  NH S++HV++ GG  DF SH
Sbjct: 49  VDRNHHSNRHVSRHGG--DFFSH 69


>At2g40240.1 68415.m04948 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 351

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -3

Query: 401 DNGRNVSNTVRLMPSVRSLQRGCP*I-GRNTRCSAADL--KSVCILGRRSDS*VFLGQHT 231
           D  + ++NT      +  L+R  P I G  +R +A D+    +C LGR  D+ + +G  +
Sbjct: 75  DTFKFLTNTASYSSYLEDLRRVLPQIDGGFSRKNAYDILISRLCKLGRIDDALIVIGDMS 134

Query: 230 QSQTGNDESIHLHI*CDL 177
             + G   S +  I C L
Sbjct: 135 NGRLGLTPSTYHPILCSL 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,302
Number of Sequences: 28952
Number of extensions: 286594
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)