Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0100
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   2.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   4.7  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   4.7  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   6.2  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   6.2  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    25   8.1  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 114 KAVLSTYVKRTCYFFENS 167
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 377 TVRLMTFSSFATTWLSL 327
           T+R+  FSSF  TW+ L
Sbjct: 663 TIRVQNFSSFEKTWIGL 679


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 169 H*INRIKYEGVCSHRCLSGSGCAGRGRLI-YQNVDQGC 279
           H I+R++ +GVC  RCL          L+ Y  ++ GC
Sbjct: 446 HAISRVEAQGVCVDRCLFQLASLAYEFLVRYGYINYGC 483


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +2

Query: 32  NYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK 175
           NYN+   C   H D   L +A CA  CK     +   H     EF TK
Sbjct: 16  NYNIWIDCDPGHDDVVALTLAACAGHCK--ILGVSTVHGNTTLEFTTK 61


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 573 ALSSVVVTREVHFXTPLSDVXFENQWFSPTKSSDNFL 463
           AL+++  ++ V+F   +  V F   W +  +SS NF+
Sbjct: 357 ALAAIASSKNVYFIASVDHVNFALLWDTSLESSFNFV 393


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 217 LSGSGCAGRGRLIYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKVISLTVFETFLP 396
           +S  GC    + I   V +G + T+     S+  G F +  V++   + + +   ETF P
Sbjct: 341 ISQDGCKKVSKHIEDAVSKGAKITVGGKEISSSKGYFFEPTVLSGVTQDMLVASEETFGP 400

Query: 397 LSPV 408
           L+ V
Sbjct: 401 LASV 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,823
Number of Sequences: 5004
Number of extensions: 44812
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)