Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0100
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical p...    31   0.60 
AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical ...    31   0.60 
U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family ...    27   7.4  
AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine r...    27   9.8  

>Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 184 IKYEGVCSHRCLSGSGCAGRGRLIYQNVDQGCRRTLSLPHCSAYYGQ 324
           +K+ G   H C+ GSG     R   +  DQ   RT+S+  CS  +G+
Sbjct: 182 LKHSGRLGHSCVYGSGTWSERRQYEEPFDQVSERTISI--CSTGHGE 226


>AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 184 IKYEGVCSHRCLSGSGCAGRGRLIYQNVDQGCRRTLSLPHCSAYYGQ 324
           +K+ G   H C+ GSG     R   +  DQ   RT+S+  CS  +G+
Sbjct: 182 LKHSGRLGHSCVYGSGTWSERRQYEEPFDQVSERTISI--CSTGHGE 226


>U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family
           protein 1 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 29/98 (29%), Positives = 46/98 (46%)
 Frame = +3

Query: 72  TSHCWKSPSAPVCVKAVLSTYVKRTCYFFENSPLNKSHQI*RCMLSSLPVWLWVCWPRKT 251
           TSH   SPS P+C+ A  S        F+ +  L+K   + +       VWL   W +K 
Sbjct: 31  TSHI-VSPSFPICIAAKCSRCGCVAAMFYADFVLSKKGPLSK-------VWLAAHWEKK- 81

Query: 252 HLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEGH 365
            LS+ +   +TD    A+  +++P Q   + + RT GH
Sbjct: 82  -LSKAQ-IFETDV-DEAVNEIMQPSQ---KLALRTTGH 113


>AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine
           receptor, class u protein25 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 307 SAYYGQFKDNHVVANELKVISLTVFETFL 393
           S  +G+F+D HV    L VISL+ F + L
Sbjct: 52  SKLFGEFRDKHVNLQLLGVISLSNFMSIL 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,900
Number of Sequences: 27780
Number of extensions: 250878
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)