Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0099
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    28   1.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    28   1.3  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    27   3.1  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   7.1  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   7.1  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   7.1  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    25   9.3  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 347  AIFYLKKKKDISYLHNTLKLIQMQGHTAV 261
            AI + + KKD+ Y+H  L    +  HT V
Sbjct: 1418 AIIFCRTKKDVEYIHRRLHQSDLFAHTHV 1446


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 347  AIFYLKKKKDISYLHNTLKLIQMQGHTAV 261
            AI + + KKD+ Y+H  L    +  HT V
Sbjct: 1418 AIIFCRTKKDVEYIHRRLHQSDLFAHTHV 1446


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 281 MQGHTAVFLLDTPMLDIDSYIGDH 210
           M  H A+   DTPM++I S  GD+
Sbjct: 1   MDYHIAILNADTPMVEITSAYGDY 24


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 338 YLKKKKDISYLHN-TLKLIQMQGHTAVFL-LDTPMLDIDSYIGDHITVL*RHS 186
           Y +    ++ +HN  L    +     +FL LDTP  + D ++  H+T +  H+
Sbjct: 514 YGRYNPKVAPIHNINLPAALLSRFDILFLILDTPSRETDEHLAQHVTYVHMHN 566


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 275 PAFELTLTCCVGKKYLFFFLNKKSREFVNFYQDSNVVL 388
           P F L + C     YL+F  + +S+E +++Y  S +++
Sbjct: 491 PEFGLFVNCEESSNYLWFNYSHRSKE-IDYYHMSGILM 527


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = -1

Query: 321 RYFLPTQHVKVNSNAGTHCGVFVGHTNVRH 232
           +Y +P + + V ++  T CG ++    ++H
Sbjct: 183 QYMIPFRDINVATSCRTFCGYYISDDAIKH 212


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 338 KKSREFVNFYQDSNVVL 388
           KK REF N Y + NV+L
Sbjct: 76  KKIREFQNIYGEKNVIL 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,839
Number of Sequences: 5004
Number of extensions: 45139
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)