Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0098
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    26   4.2  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   4.2  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   5.5  

>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 258 FQGVMPVFFLYSSSSGNPVDG 196
           +QG++ VFF   SS G PV G
Sbjct: 214 YQGIINVFFAIGSSLGGPVGG 234


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 196  SVYWVPTRRRVQEEHRHHALEIAELRSWXET 288
            S+ W+   +R++E  R+H L I  + +W E+
Sbjct: 1049 SLSWISNIKRIRE-FRYHRLRIRRMTAWPES 1078


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +1

Query: 274 SWXETQTHMPSDVITDLDXILAHHSCKRNPEQTXQVLELHYTLKTQYSFF 423
           +W    +    D+  D+D I ++   + NP  +  V E ++++   + FF
Sbjct: 299 AWLSYNSDASYDLGPDIDEIDSYDDAELNPLYSWDVTESNHSINIWFDFF 348


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 400 LKTQYSFFQNRTLDDEVELTLKRMSVLMVLDLWQYLEAHG 519
           L T +  F    + DE+ +  K   VL +    +YLE HG
Sbjct: 85  LITSFKSFVLSDVMDEISIDTKCKIVLQISSALEYLEKHG 124


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 253 LEIAELRSWXETQTHMPSDVITDL 324
           L I EL S  +  TH+PSD +  L
Sbjct: 593 LSIGELNSAYDLYTHIPSDALNTL 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,445
Number of Sequences: 5004
Number of extensions: 35829
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)