Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0098
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982...    27   7.4  
03_05_0096 + 20754478-20754584,20755548-20755677,20756212-207562...    27   7.4  
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    27   9.8  

>05_07_0305 -
           29097478-29097598,29097766-29097866,29098136-29098288,
           29098404-29098542,29098649-29098719,29099022-29099333,
           29099605-29099903,29100011-29100271,29100365-29100471,
           29100588-29100739,29100816-29100970,29102946-29103141,
           29103340-29103468,29103540-29103641,29103736-29103889,
           29103970-29104058
          Length = 846

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 493 GREPLILTFFSM*VPLHHRG-FDFGKTSTESSACSVAPALVSFAPDSSCSCDGLR 332
           G  P  L  F + VP H R      K+ T   +  V+   VSF  D+    DGLR
Sbjct: 121 GNYPEFLEEFKIFVPHHLRAHLPNEKSCTSPKSSRVSETFVSFTLDAMNKLDGLR 175


>03_05_0096 +
           20754478-20754584,20755548-20755677,20756212-20756268,
           20756741-20756794,20757610-20758287
          Length = 341

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/70 (25%), Positives = 27/70 (38%)
 Frame = +1

Query: 118 IIIFCLDFFSXRKFCNSLYRRDNVGQSVYWVPTRRRVQEEHRHHALEIAELRSWXETQTH 297
           +I FC   F+ R  C S    D       W     R++E H+     I  + SW E +  
Sbjct: 229 VICFCCKIFNSRN-CKSSLEHDGFRD---WRHISERLKE-HKASVKHITNMTSWNELRAR 283

Query: 298 MPSDVITDLD 327
           +  +   D D
Sbjct: 284 LRKNETIDKD 293


>11_06_0768 +
           27129007-27129038,27129140-27129220,27129723-27130089,
           27130165-27130255,27130515-27130595,27130764-27131830,
           27132060-27132071,27132465-27133209,27133210-27135244,
           27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 223 RVQEEHRHHALEIAELRSWXETQTHMPSDVITDLDXILAH 342
           R +E   HHA ++ E + W   Q    +  IT+LD ++ H
Sbjct: 580 RTRELSAHHAKQVLEDQDWNSQQ---KAKSITELDELIRH 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,006,256
Number of Sequences: 37544
Number of extensions: 220517
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)