Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0098
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40798-2|AAQ01525.2|  389|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical p...    27   6.7  
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AY943817-1|AAY18583.1|  703|Caenorhabditis elegans signal transd...    27   8.8  
AL132952-23|CAN99759.1|  703|Caenorhabditis elegans Hypothetical...    27   8.8  
AL132952-21|CAB61149.2|  706|Caenorhabditis elegans Hypothetical...    27   8.8  

>U40798-2|AAQ01525.2|  389|Caenorhabditis elegans Hypothetical
           protein R13A1.9 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 327 IQICNDITWHMSLCLXPAS*FSYFQGVMPV 238
           I  CN I W M + L PA+ F  + G M V
Sbjct: 185 INWCNSIVWRMHIPLIPATSFFLYLGWMKV 214


>Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D2.13 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 418 TSTESSACSVAPALVSFAPDSSCSCDGLRSN 326
           TST  S+ +++ +  S+ PDSS SC    +N
Sbjct: 193 TSTLISSTAISSSCTSYIPDSSSSCASWAAN 223


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 433 FDFGKTSTESSACSVAPALVSFAPD 359
           F FG+ S+  SAC+    +V F PD
Sbjct: 246 FSFGRCSSSFSACTNGIPIVMFCPD 270


>AY943817-1|AAY18583.1|  703|Caenorhabditis elegans signal
           transducer and activatorof transcription STA-1 protein.
          Length = 703

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +1

Query: 232 EEHRHHALEIAELRSWXETQTHMPSDVITDLDXILAHHSCKRNPEQTXQVLELHYTLKTQ 411
           E H++H +E+++      T + M  DV T L     ++    NP        LH+   +Q
Sbjct: 630 EVHQNHMMEMSDELGQILTVSDMSGDVETLLGPAFKNNITNYNPHDGNHQHNLHFVDMSQ 689

Query: 412 YSFFQ 426
               Q
Sbjct: 690 QGMMQ 694


>AL132952-23|CAN99759.1|  703|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17c protein.
          Length = 703

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +1

Query: 232 EEHRHHALEIAELRSWXETQTHMPSDVITDLDXILAHHSCKRNPEQTXQVLELHYTLKTQ 411
           E H++H +E+++      T + M  DV T L     ++    NP        LH+   +Q
Sbjct: 630 EVHQNHMMEMSDELGQILTVSDMSGDVETLLGPAFKNNITNYNPHDGNHQHNLHFVDMSQ 689

Query: 412 YSFFQ 426
               Q
Sbjct: 690 QGMMQ 694


>AL132952-21|CAB61149.2|  706|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17a protein.
          Length = 706

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +1

Query: 232 EEHRHHALEIAELRSWXETQTHMPSDVITDLDXILAHHSCKRNPEQTXQVLELHYTLKTQ 411
           E H++H +E+++      T + M  DV T L     ++    NP        LH+   +Q
Sbjct: 633 EVHQNHMMEMSDELGQILTVSDMSGDVETLLGPAFKNNITNYNPHDGNHQHNLHFVDMSQ 692

Query: 412 YSFFQ 426
               Q
Sbjct: 693 QGMMQ 697


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,696,010
Number of Sequences: 27780
Number of extensions: 199472
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)