Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0098
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20260.1 68418.m02412 exostosin family protein contains Pfam ...    29   2.0  
At4g02090.1 68417.m00280 expressed protein                             27   6.2  
At1g67930.1 68414.m07757 Golgi transport complex protein-related...    27   8.2  

>At5g20260.1 68418.m02412 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 334

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 244 HHALEIAELRSWXETQTHMPSDVITDLDXILAHHSCKRNPEQTXQVLEL 390
           H+AL  +++  W +   H+PS  I ++  IL   S +R      +VL++
Sbjct: 253 HYALPFSDVLDWTKFTIHVPSKKIPEIKTILKSISWRRYRVLQRRVLQV 301


>At4g02090.1 68417.m00280 expressed protein 
          Length = 202

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 267 FSYFQGVMPVFFLYSSSSGNPVDGLTDIISSV*RI 163
           FSY++G++P F   S  + NP        +SV R+
Sbjct: 124 FSYYEGILPWFTTRSYKNNNPATDTVVAATSVGRL 158


>At1g67930.1 68414.m07757 Golgi transport complex protein-related
           similar to golgi transport complex protein (GTC90)
           GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
           transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
          Length = 832

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 283 ETQTHMPSDVITDLDX-ILAHHSCKRNPEQTXQVLELHYTLKTQYSFFQNRTLDDEV 450
           ET     S +I DL   I+ HH   R P++    ++ +     QYS + +   +D++
Sbjct: 734 ETSQMGSSPLINDLPPSIVLHHLYTRGPDELESPMQKNRLSPKQYSLWLDNQREDQI 790


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,293
Number of Sequences: 28952
Number of extensions: 185849
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)