Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0097
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      29   4.7  
SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)               28   8.2  

>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 326  ACTASHVPDPITARPVPPDISASNWTSHLASVE 228
            A TA H P  + +    P +SAS   SH A+VE
Sbjct: 1719 ALTAIHPPSSLLSPTFSPSLSASTLLSHSAAVE 1751


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 326 ACTASHVPDPITARPVPPDISASNWTSHLASVE 228
           A TA H P  + +    P +SAS   SH A+VE
Sbjct: 31  ALTAIHPPSSLLSPTFSPSLSASTLLSHSAAVE 63


>SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 97  DARMCMYFNKRHIVVPKLSNISA*IFWNSLR 189
           D+RM M   +RH +VP L  +    FW   R
Sbjct: 6   DSRMAMRVKQRHGMVPPLDQLEYDDFWKEFR 36


>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
          Length = 367

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 336 TGGSNAGPTRTQSFDYGTIRAYTCV 410
           T  S  GP   + F YG  R Y+CV
Sbjct: 227 TDSSEYGPVSAEGFHYGPQRRYSCV 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,652,832
Number of Sequences: 59808
Number of extensions: 380832
Number of successful extensions: 1152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)