Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0097
         (689 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033856-1|AAH33856.1|  283|Homo sapiens LARP1 protein protein.        30   6.8  
BC001460-1|AAH01460.2| 1019|Homo sapiens La ribonucleoprotein do...    30   6.8  
AB018274-1|BAA34451.1| 1096|Homo sapiens KIAA0731 protein protein.     30   6.8  

>BC033856-1|AAH33856.1|  283|Homo sapiens LARP1 protein protein.
          Length = 283

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -1

Query: 386 AIIEGLGSGGA---CIGATRSRRACTASHVPDPITARPVPPDISASNWTSHLASVETL 222
           +++ G G G     C   + SR A   S  P P T +PV  D   + WTS  ++ +TL
Sbjct: 227 SVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVRED---AKWTSQHSNTQTL 281


>BC001460-1|AAH01460.2| 1019|Homo sapiens La ribonucleoprotein domain
            family, member 1 protein.
          Length = 1019

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -1

Query: 386  AIIEGLGSGGA---CIGATRSRRACTASHVPDPITARPVPPDISASNWTSHLASVETL 222
            +++ G G G     C   + SR A   S  P P T +PV  D   + WTS  ++ +TL
Sbjct: 963  SVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVRED---AKWTSQHSNTQTL 1017


>AB018274-1|BAA34451.1| 1096|Homo sapiens KIAA0731 protein protein.
          Length = 1096

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -1

Query: 386  AIIEGLGSGGA---CIGATRSRRACTASHVPDPITARPVPPDISASNWTSHLASVETL 222
            +++ G G G     C   + SR A   S  P P T +PV  D   + WTS  ++ +TL
Sbjct: 1040 SVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVRED---AKWTSQHSNTQTL 1094


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,609,380
Number of Sequences: 237096
Number of extensions: 1944017
Number of successful extensions: 5725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5725
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)