Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0097
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 449 WCQPKCKDFEVQPQLWMGLVSNTVPSAW 532
           W Q   K       L+ GLVS+T    W
Sbjct: 300 WTQASAKAISETGALFFGLVSDTALGCW 327


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 275  PDISASNWTSHLASVE 228
            PD  + NWT  + +VE
Sbjct: 1147 PDTDSENWTPKMMAVE 1162


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 346 PMQAPPEPSPSIMAP 390
           P  APP P PS   P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 449 WCQPKCKDFEVQPQLWMGLVSNTVPSAW 532
           W Q   K       L+ GLV +T  + W
Sbjct: 301 WTQASAKGISDNGVLFFGLVGDTSLACW 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,195
Number of Sequences: 438
Number of extensions: 3292
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)