Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0096
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   128   2e-30
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    27   5.7  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    27   7.6  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    27   7.6  
Z50109-6|CAA90439.2|  344|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  128 bits (309), Expect = 2e-30
 Identities = 61/74 (82%), Positives = 65/74 (87%)
 Frame = +2

Query: 269 LXPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIXL 448
           L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI  
Sbjct: 94  LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVA 153

Query: 449 AKLLVLPVRRGYWG 490
           AKL V+PVRRGYWG
Sbjct: 154 AKLAVVPVRRGYWG 167



 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 27/38 (71%), Positives = 29/38 (76%)
 Frame = +3

Query: 141 EDQKEWVPVTKLGRLVRXGKIDKLESIYLFSLPIKEFE 254
           E + EW PVTKLGRLV+  KI  LE IYL SLPIKEFE
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFE 89


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 361 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 275
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 361 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 275
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 194 RKNRQTREHLLVFFTNQRIRVIXFFLXPSLNDEVLKIMPVQKQTRAGQRTRFK-AFVAIG 370
           ++ R T ++  +  T +RIRV  F +  S    +L  +PV+K+    +  RF  A+++  
Sbjct: 25  KRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISFL 84

Query: 371 DN 376
           DN
Sbjct: 85  DN 86


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 310 CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 438
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 310 CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 438
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>Z50109-6|CAA90439.2|  344|Caenorhabditis elegans Hypothetical
           protein C09H10.8 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 480 PLRTGRTNSLAXIIAPRMAVATSLLHFTPKPI*PLLSPM 364
           PLR   TNS+  + + R + + S  HF    + P ++PM
Sbjct: 191 PLRLSITNSIISMASMRSSRSRSASHFLEPNMSPAIAPM 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,897,913
Number of Sequences: 27780
Number of extensions: 184351
Number of successful extensions: 444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)