Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0096
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   140   5e-34
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             140   6e-34
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   139   1e-33
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   139   1e-33
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           139   1e-33
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   139   1e-33
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con...    44   8e-05
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi...    28   3.0  
At3g18530.1 68416.m02357 expressed protein similar to unknown pr...    28   3.0  
At3g01450.1 68416.m00069 expressed protein                             27   5.3  

>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  140 bits (339), Expect = 5e-34
 Identities = 62/80 (77%), Positives = 72/80 (90%)
 Frame = +2

Query: 251 RVIXFFLXPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
           ++I   + PSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAI
Sbjct: 77  QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136

Query: 431 RGAIXLAKLLVLPVRRGYWG 490
           RGAI LAKL V+P+RRGYWG
Sbjct: 137 RGAIILAKLSVVPIRRGYWG 156



 Score = 60.1 bits (139), Expect = 8e-10
 Identities = 24/37 (64%), Positives = 33/37 (89%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVRXGKIDKLESIYLFSLPIKEFE 254
           ++++WVPVTKLGRLV+ GKI K+E IYL SLP+KE++
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQ 77


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  140 bits (338), Expect = 6e-34
 Identities = 63/80 (78%), Positives = 71/80 (88%)
 Frame = +2

Query: 251 RVIXFFLXPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
           ++I   + P+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 86  QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145

Query: 431 RGAIXLAKLLVLPVRRGYWG 490
           RGAI LAKL V+PVRRGYWG
Sbjct: 146 RGAIILAKLSVVPVRRGYWG 165



 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 22/37 (59%), Positives = 31/37 (83%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVRXGKIDKLESIYLFSLPIKEFE 254
           ++++WVPVTKLGRLV  G I ++E IYL SLP+KE++
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQ 86


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  139 bits (336), Expect = 1e-33
 Identities = 63/80 (78%), Positives = 71/80 (88%)
 Frame = +2

Query: 251 RVIXFFLXPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
           ++I   + P+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85  QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144

Query: 431 RGAIXLAKLLVLPVRRGYWG 490
           RGAI LAKL V+PVRRGYWG
Sbjct: 145 RGAIILAKLSVVPVRRGYWG 164



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVRXGKIDKLESIYLFSLPIKEFE 254
           ++ +WVPVTKLGRLV   KI KLE IYL SLP+KE++
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  139 bits (336), Expect = 1e-33
 Identities = 63/80 (78%), Positives = 71/80 (88%)
 Frame = +2

Query: 251 RVIXFFLXPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
           ++I   + P+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85  QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144

Query: 431 RGAIXLAKLLVLPVRRGYWG 490
           RGAI LAKL V+PVRRGYWG
Sbjct: 145 RGAIILAKLSVVPVRRGYWG 164



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVRXGKIDKLESIYLFSLPIKEFE 254
           ++ +WVPVTKLGRLV   KI KLE IYL SLP+KE++
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  139 bits (336), Expect = 1e-33
 Identities = 63/80 (78%), Positives = 71/80 (88%)
 Frame = +2

Query: 251 RVIXFFLXPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
           ++I   + P+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85  QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144

Query: 431 RGAIXLAKLLVLPVRRGYWG 490
           RGAI LAKL V+PVRRGYWG
Sbjct: 145 RGAIILAKLSVVPVRRGYWG 164



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVRXGKIDKLESIYLFSLPIKEFE 254
           ++ +WVPVTKLGRLV   KI KLE IYL SLP+KE++
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  139 bits (336), Expect = 1e-33
 Identities = 63/80 (78%), Positives = 71/80 (88%)
 Frame = +2

Query: 251 RVIXFFLXPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
           ++I   + P+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85  QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144

Query: 431 RGAIXLAKLLVLPVRRGYWG 490
           RGAI LAKL V+PVRRGYWG
Sbjct: 145 RGAIILAKLSVVPVRRGYWG 164



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVRXGKIDKLESIYLFSLPIKEFE 254
           ++ +WVPVTKLGRLV   KI KLE IYL SLP+KE++
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85


>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
           contains Pfam profiles PF03719: Ribosomal protein S5,
           C-terminal domain, PF00333: Ribosomal protein S5,
           N-terminal domain
          Length = 303

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 18/62 (29%), Positives = 38/62 (61%)
 Frame = +2

Query: 287 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIXLAKLLVL 466
           + V+++  V K  + G++ +F+A V +GD  G++G+G   +KEV  A++ +   A+  ++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208

Query: 467 PV 472
            V
Sbjct: 209 QV 210


>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
           transporter ZIP2 [Arabidopsis thaliana]
           gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 353

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 353 AFVAIGDNNGHIGLGVKCSKE 415
           AFVA G NN H+G  V  S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169


>At3g18530.1 68416.m02357 expressed protein similar to unknown
           protein GB:AAF24615 from [Arabidopsis thaliana]
          Length = 297

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 438 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMILRTSSFR 280
           A   A+     H +P  + P L P   N   R+R  A  CF +G + R  + R
Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235


>At3g01450.1 68416.m00069 expressed protein
          Length = 326

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 438 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 316
           A   A+     H +P  + P L P   N   R+R  A  CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,377,233
Number of Sequences: 28952
Number of extensions: 173364
Number of successful extensions: 397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)