Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0093
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   1.8  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   2.4  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   2.4  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   3.1  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   4.1  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   4.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   7.2  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    24   7.2  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    24   7.2  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 152 WDYVP*LTWRRARVLCFYPVLKSNIS*FTRNQRARIGV 265
           W Y+  +  +RAR LCF+ VL S  S F     ++ G+
Sbjct: 174 WQYLSAIAGKRARSLCFH-VLSSKSSTFYSLTESKSGL 210


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -3

Query: 380 VYFRSAMLFAVTTS**AVGQLGELPRFTFDVSRSVFQVTHRSLHVGFV*INLYWILTLG 204
           +YF SA+L  + +     GQLG+ P     +   +F  +HR+  +  + I ++WI+ LG
Sbjct: 186 IYFFSALLVFLVSRSWVAGQLGQAPEVW--LFNQIF--SHRN-SLTRIKIIIWWIICLG 239


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 317 RVAPQLIKTLLQQTAWPTGNRQKE 388
           R  PQL K LL QTA P  + Q++
Sbjct: 673 RAHPQLPKNLLSQTAGPLWDEQQD 696


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 261 VCHLEDRPRHVKRESRELTELPHSSLRRCYSKQHG 365
           VCH+    R+VK  +    ELP   L+   S Q+G
Sbjct: 499 VCHVTFFDRYVKEITTPQNELPTIFLQEIASNQYG 533


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 231 NSHETNVQGSVCHLEDRPRHVKRESRELTELPHS 332
           NS   N +G      D  +H K ES +  E+P S
Sbjct: 880 NSEAENEKGLSTEQRDEKKHAKVESFQRQEMPRS 913


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -3

Query: 263 HRSLHVGFV*INLYWILTLGKNITPALFSKLITERSPNLIIEFAMAVKKFIDSEISFLTN 84
           H    +G + + L   L +G N+ P + SK IT+  PN+ IE+     ++  S +   T 
Sbjct: 59  HLGYRIGAIFVILATSL-IGMNL-PLVLSK-ITKNRPNVYIEYLYLFARYFGSGVILATA 115

Query: 83  VI 78
            I
Sbjct: 116 FI 117


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 288  HVKRESRELTELPHSSLRRCYSKQHGR 368
            H  R  RE  E   + LRR YSKQH +
Sbjct: 932  HYSRNQREEAE---NILRRRYSKQHSK 955


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 279 RPRHVKRESRELTELPHSSLRR 344
           +  HV R SR + +L  S LRR
Sbjct: 76  KENHVHRRSRSINDLDSSKLRR 97


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 105 RNQFFNECYTGEITPISIGRDAATHKANKTHARFS 1
           R+QF N+ +  +   I I  D  T++  +   +FS
Sbjct: 386 RSQFLNDHFDADFNFIQIDHDPITNQETRKPVKFS 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,858
Number of Sequences: 5004
Number of extensions: 29311
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)