Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0093
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0871 + 28396964-28399843                                         30   0.57 
12_02_1285 - 27550548-27550709,27551473-27551516,27551588-275516...    28   3.0  
07_03_1138 - 24240155-24240219,24240427-24240559,24240640-242411...    27   4.0  
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613...    27   5.3  
07_01_1206 - 11505450-11506403                                         27   5.3  
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    26   9.2  

>03_05_0871 + 28396964-28399843
          Length = 959

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +1

Query: 82  TFVKKL--ISESINFLTAM-ANSIMRLGLRSVINLEKSAGVMFLPSVKIQYKLIHTKPTC 252
           TF++KL  I ES++ L  +  N  + L +R + NL+   GV+ LP+ + +  L+      
Sbjct: 675 TFIRKLPGILESLDTLRHIYLNWRVSLDIRRLTNLQTLHGVIILPNSQAERNLMALTNLR 734

Query: 253 KDRCVTWK 276
           K R  TW+
Sbjct: 735 KLRFRTWR 742


>12_02_1285 -
           27550548-27550709,27551473-27551516,27551588-27551651,
           27551733-27552463,27552754-27552798,27553663-27554167
          Length = 516

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = -3

Query: 302 FTFDVSRSVF--QVTHRSLHVGFV*INL--YWILTLGKNITPALFSKLITERSPNLIIEF 135
           F+ D+ R +F   +T  S  +G + + L  +W+L +G N T       + + +  +I+ F
Sbjct: 117 FSADLGR-IFGDSITPGSTRLGAIIVYLVGFWLLDVGNNATQGPCRAFLADLTEGMIVLF 175

Query: 134 AMAVKKFIDSE 102
            M + +F +++
Sbjct: 176 VMEMLEFHEND 186


>07_03_1138 -
           24240155-24240219,24240427-24240559,24240640-24241182,
           24241306-24241411,24241630-24241727,24242289-24242516,
           24242990-24243307,24243411-24243695,24243706-24243771,
           24244337-24244738
          Length = 747

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 258 SVCHLEDRPRHVKRESRELTELPHS 332
           SV  +++R RHVK +SRE  E+P S
Sbjct: 535 SVAQVKERSRHVKNDSRE--EIPFS 557


>07_03_0681 +
           20659789-20659839,20660030-20660170,20661294-20661399,
           20661625-20661806,20661888-20662113,20662198-20662624,
           20662844-20663189,20663271-20663849
          Length = 685

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 252 QGSVCHLEDRPR-HVKRESRELTELPHSSLRRCYSKQHG 365
           +G   HL++  R +  R+SREL  L HSSLR    +  G
Sbjct: 256 RGCRYHLKEYDRRNYPRDSRELFNLRHSSLRVTIERAFG 294


>07_01_1206 - 11505450-11506403
          Length = 317

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 197 ITPALFSKLITERSPNLIIEFAMAVKKFIDSEISFLTNVIQAKSLRY 57
           +T  L  KL     P    +F MA +KFIDS+ SF++   +A  + Y
Sbjct: 254 VTGQLMEKLHHITDPT---DFLMAAEKFIDSK-SFISTTTRANRITY 296


>09_04_0501 +
           18153252-18153453,18153973-18154224,18154809-18155015,
           18155198-18157046,18157334-18157381,18158222-18158291,
           18158380-18158475,18158583-18158621,18158714-18158924,
           18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +3

Query: 243 TNVQGSVC----HLEDRPRHVKRESRELTELPHSSLRRCYSKQH 362
           ++++GSVC      E R    +R SREL E+      RC    H
Sbjct: 217 SSLKGSVCVAERRREGRGEEGRRRSRELMEMEMEMYSRCARPSH 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,203,744
Number of Sequences: 37544
Number of extensions: 188054
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)