Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0093
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical pr...    26   8.2  

>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 49  SDGYRSDFACITFVKKLISESINFLTAMANS 141
           SD Y SDFA     +   SE+ ++LTA  +S
Sbjct: 345 SDSYSSDFASTAIPEASESENSDYLTASVSS 375


>Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical
           protein C08H9.14 protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = -3

Query: 305 RFTFDVSRSVFQVTHRSLHVGFV*INLYWILTLGKNITPALFSKLITERSPNLIIEFAMA 126
           +F +      F +  +S+ +      L  ++++G   +  LFS ++ ++   LI   A+ 
Sbjct: 87  KFKYGTKDGFFDMKRKSMELNR---GLKVMVSIGGYESSPLFSDVLVKKKKKLIASIALL 143

Query: 125 VKKF 114
           VKKF
Sbjct: 144 VKKF 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,704,934
Number of Sequences: 27780
Number of extensions: 165220
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)