Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0093
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    20   8.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   8.7  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 246 NVQGSVCHLEDRPRHVKRESRELTELPHSSLRRCYSKQ 359
           N +G+V H+E RP   K+E  +   L    + R Y  Q
Sbjct: 110 NFKGTVTHVESRPS--KKEGLQFDVLVKVDMTRQYLLQ 145


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = -3

Query: 248 VGFV*INLYWILTLGKNITPALFSKLITERSPNLIIEFAMAVKKFI 111
           +GFV   L ++  +G  +   +F    + R+P+ +    +A+  F+
Sbjct: 55  LGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFL 100


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = -3

Query: 248 VGFV*INLYWILTLGKNITPALFSKLITERSPNLIIEFAMAVKKFI 111
           +GFV   L ++  +G  +   +F    + R+P+ +    +A+  F+
Sbjct: 21  LGFVIGMLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVINLAISDFL 66


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 361 CCLL*QRLNELWGNSVSSRDSRLTCRG 281
           CCL    +N +  N   S + R +C G
Sbjct: 355 CCLCLDSMNAVIRNFNESENRRNSCLG 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,001
Number of Sequences: 438
Number of extensions: 2116
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)