Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0093
         (391 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58350.1 68414.m06637 expressed protein contains Pfam profile...    28   2.6  
At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put...    27   5.9  

>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
           PF05057: Protein of unknown function (DUF676);
           supporting cDNA gi|6520166|dbj|AB028199.1|
          Length = 794

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 206 GKNITPALFSKLITERSPNLIIEFAMAVKKFIDSEISFLTNVIQAKSLR 60
           G N+T  + S+++   +P+     +  V K +D + SFLT   + K  R
Sbjct: 71  GDNVTRGIPSRVVQYEAPDSGANDSYGVWKIVDKDNSFLTQPFRIKYAR 119


>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
           putative contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain
          Length = 772

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 234 SHETNVQGS---VCHLEDRPRHVKRESRELTELPHSSLRRCYSKQHG 365
           SHE ++ G+   + H    P  +KR   + TE   +SL+R  SK HG
Sbjct: 410 SHEIDMNGNAMDLMHPSSIPP-IKRVIAKATEPAEASLKRTTSKSHG 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,826
Number of Sequences: 28952
Number of extensions: 153136
Number of successful extensions: 407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)