Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0091
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    27   3.3  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   3.3  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   5.8  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   5.8  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    26   5.8  

>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 12  VLARFALIHPKKVDALTLINCTSNQAGWIEWAYQKMNTR 128
           VLA F L+    ++AL  I+   ++  WIEW Y+   T+
Sbjct: 32  VLAFFCLLGLDLLNALNTID-DDDKKSWIEWIYKNYVTK 69


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 24  FALIH-PKKVDALTLINCTSNQAGWIE-WAYQKMNTRSLRSR 143
           F LI  PK++  L LI CT +   W    AY    TR LR R
Sbjct: 351 FPLISSPKEMAWLLLIVCTDSNESWFPVHAYINTKTRILRPR 392


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 285 SMN-IDRLLGFSYV*NSSCTSGSDRGCGLRGNVRNDATKGSPARPGSCHGNEGTECS 118
           SMN   + LG       S T+      G   N+++   + SP   G   G+ GTECS
Sbjct: 44  SMNKAPQSLGLCTARGDSPTNQDRMAYGYLNNLKDTTNRDSPFFYGLFDGHGGTECS 100


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 51  DALTLINCTSNQAGWIEWAYQKMNTRSLRSRGM 149
           ++ TLIN  S  +GW++  +Q+++ + L  + M
Sbjct: 748 ESFTLINTVSLVSGWLKMLHQRIDYKILTEKVM 780


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 455 MVLEEQPSKISEAFRLFLRARAMVRICNLQASITKNILPLLYLNRLSIINYDV 613
           +VLE  P  I  A RL+ R +  + +  ++  I + +  L Y++   I + D+
Sbjct: 106 LVLEFMPETIYRASRLYTRQKLSMPMLEVKLYIYQLLRSLAYIHASGICHRDI 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,421
Number of Sequences: 5004
Number of extensions: 69825
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)