Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0091
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   1e-17
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.072
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)                    31   1.6  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_18289| Best HMM Match : IgG_binding_B (HMM E-Value=7)               29   6.3  
SB_16037| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)                     29   6.3  
SB_20830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 44/93 (47%), Positives = 62/93 (66%), Gaps = 7/93 (7%)
 Frame = +2

Query: 254 LNPSNLSMFIEAYVRRSDLGICR------NADTIKVPVLNITGALSPHVDDTVTFNGRLN 415
           LNP NL++FI +Y+ R+++ I R      N  ++K P L +TG  SPH DD V  N RL+
Sbjct: 189 LNPHNLALFINSYITRTNIDIVRPVEGGPNPRSLKCPTLLVTGTFSPHGDDVVESNSRLD 248

Query: 416 PNNSTWMKISDC-AMVLEEQPSKISEAFRLFLR 511
           P  S +MK+SDC  M LEEQP+K+++A  LFL+
Sbjct: 249 PKISEYMKVSDCGGMPLEEQPAKVAQALILFLQ 281



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = +3

Query: 126 RSLRSRGMTQGVLDYLLWHHFGRFPEDRNHDLTQMYKN 239
           R L ++G+T  V DYLLWHHFG   ++ N DL+  YK+
Sbjct: 146 RQLHNKGLTTFVEDYLLWHHFGEKTKEENLDLSSAYKD 183


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 35.1 bits (77), Expect = 0.072
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 132 LRSRGMTQGVLDYLLWHHFGRFPEDRNHDL 221
           L ++G T+G  +YL WHHF R   ++  D+
Sbjct: 862 LNAKGFTEGTANYLKWHHFERVGGEKRKDI 891


>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
          Length = 1307

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 367  STRDVQHRHLDGVGVTAYTQVGAPHVRLNEHRQV 266
            STR++  R L+G     Y ++ A   RLN HR V
Sbjct: 1272 STREISSRCLEGETSVRYPEIAAELERLNRHRSV 1305


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 333  VSALRHIPRSERRTYASMNIDRLLGFSYV*NSSCTSGSDRGC 208
            +S LRHI   +RR        + + F    NSS +SG   GC
Sbjct: 1235 ISGLRHITTEQRRRQPRRRRRKTMQFDLEFNSSTSSGHTPGC 1276


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 210 NHDLTQMYKN-YFTRN*TPATCRCSLRRTCGAPTWVYAVTPTPSRCRC 350
           NH L Q  K+ YF       T RC         T++   + +P RCRC
Sbjct: 313 NHTLIQNEKHRYFALKRVLVTGRCECHGHAQKVTFIKGNSSSPGRCRC 360


>SB_18289| Best HMM Match : IgG_binding_B (HMM E-Value=7)
          Length = 143

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +2

Query: 329 DTIKVPVLNITGALSPHVDDTVTFNGRLN-----PNNSTWMKISDCAMVLEEQPSKISEA 493
           D +K+PV N   A +   +   T  G ++     PNN+  + I+DC   LE      S A
Sbjct: 2   DEVKIPVTNSPIASACQTNHISTLAGEVDNTAAHPNNTYKLSIADCGDPLESTCRHASLA 61

Query: 494 FRLFLRAR 517
             + L+ R
Sbjct: 62  LAVVLQRR 69


>SB_16037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 219 DRGCGLRGNVRNDATKGSPARP 154
           ++ CGL G VRN  T  SP +P
Sbjct: 52  EKSCGLDGRVRNVTTFSSPGKP 73


>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 632

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 233 QELFHT*LNPSNLSMFIEAYVRRSDLGIC---RNADTIKVPVLNITGALSPHV 382
           Q + +  L P NL +    +VR SDLG+    RN +TI+  V  I G ++P V
Sbjct: 204 QRIVYRDLKPENLLLDDYGHVRISDLGLAVQIRNGETIRGRVGTI-GYMAPEV 255


>SB_20830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 377 HVDDTVTFNGRLNPNNSTWMKISDCAMVLEEQ 472
           H D+ V +    N N S+WM+   CA    EQ
Sbjct: 26  HEDEVVCYLDASNENESSWMRFIRCARYRGEQ 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,204,123
Number of Sequences: 59808
Number of extensions: 576197
Number of successful extensions: 1343
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)