Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0091
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical ...    94   1e-19
Z68135-1|CAA92227.1|  325|Caenorhabditis elegans Hypothetical pr...    64   1e-10
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81542-9|CAI79191.1|  400|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protei...    29   3.1  
Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protei...    28   7.3  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    28   7.3  
AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular col...    28   7.3  
U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protei...    28   9.6  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    28   9.6  

>AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical
           protein Y48G10A.3 protein.
          Length = 343

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 39/81 (48%), Positives = 56/81 (69%)
 Frame = +3

Query: 3   GANVLARFALIHPKKVDALTLINCTSNQAGWIEWAYQKMNTRSLRSRGMTQGVLDYLLWH 182
           GANVL R+A  +  +V AL L+NC S ++GW+EW Y+K NT  LR  GMT+  +DYL+WH
Sbjct: 135 GANVLLRYAAQNQNRVIALVLVNCCSGKSGWVEWGYEKWNTSYLRKVGMTKFTVDYLMWH 194

Query: 183 HFGRFPEDRNHDLTQMYKNYF 245
           HFGR  +  + D+ + Y+ +F
Sbjct: 195 HFGRNYDRCSPDIVRQYRVFF 215



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/89 (46%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
 Frame = +2

Query: 257 NPSNLSMFIEAYVRRSDLGICRNADT---IKVPVLNITGALSPHVDDTVTFNGRLNPNNS 427
           NP++L+ FIE+Y++R+ L I R+  T   +KVPVL + GA S HV+DTV  N +L+P ++
Sbjct: 220 NPNSLAEFIESYIQRTPLPISRDGTTGVQLKVPVLQLVGAGSAHVEDTVEVNTKLDPAHA 279

Query: 428 TWMKISD-CAMVLEEQPSKISEAFRLFLR 511
            W+KISD C +VL+++P  ++E+  LFL+
Sbjct: 280 DWIKISDSCGLVLDDRPDAVTESMMLFLQ 308


>Z68135-1|CAA92227.1|  325|Caenorhabditis elegans Hypothetical
           protein ZK1073.1 protein.
          Length = 325

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +3

Query: 3   GANVLARFALIHPKKVDALTLINCTSNQAGWIEWAYQKMNTRSLRSRGMTQGVLDYLLWH 182
           GAN++ RFA+ HP ++  + L++CTS  AG IE+  +K+    L +  M+ G  DYLL H
Sbjct: 116 GANIICRFAMGHPNRIMGIVLVHCTSTTAGIIEYCKEKVMNMRLENSIMSDGAWDYLLAH 175

Query: 183 HFGRFPEDRNHDLTQM 230
            FG   + R   L ++
Sbjct: 176 KFGGESKSRQEYLEEL 191



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 50/94 (53%)
 Frame = +2

Query: 230 VQELFHT*LNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALSPHVDDTVTFNGR 409
           ++EL  T LNP NLS ++ A+ +R+DL          V  L +TG+ + H+    T +  
Sbjct: 188 LEELKAT-LNPKNLSKYLVAFTKRTDLSSTIGTKLETVDALLVTGSKASHLHTVYTTHKS 246

Query: 410 LNPNNSTWMKISDCAMVLEEQPSKISEAFRLFLR 511
           +N   +T + + + A V++E P K++ +  L  +
Sbjct: 247 MNKKKTTLLVVDNVADVMQEAPDKLARSLILLCK 280


>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
           protein T05A7.11 protein.
          Length = 1200

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 410 LNPNNSTWMKISDCAMVLEEQPSKI-SEAFRLFLRARAMVRICNLQASITKNILPLLYLN 586
           +N  NS W+   DCA+ +        +E  ++ L +  +V + +++ ++  +++PL++ N
Sbjct: 269 INMRNSEWLSKEDCAVTIHNASCLFPTEKLKISLPS-CLVNLASMERNVI-DLIPLIWRN 326

Query: 587 RLSIINYDVYL 619
               I  D++L
Sbjct: 327 VPKYIKIDLHL 337


>Z81542-9|CAI79191.1|  400|Caenorhabditis elegans Hypothetical
           protein F49A5.5b protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +2

Query: 191 TFPRRPQPRSDPDVQELFHT*LNPSNLSMFIEAYVRRSDLGICRNADTIK---VPVLNIT 361
           TF    QP  +     +FHT   PS L+    +Y  + D      + T+K   +PV   +
Sbjct: 54  TFILAKQPACETVTTSIFHTSTLPSTLTYASSSYSTKPDKSSIATSTTLKPKTLPVTTTS 113

Query: 362 GALSPHVD-DTVTFN 403
            +LS H   DT + +
Sbjct: 114 NSLSTHTKLDTTSIS 128


>U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protein
           139 protein.
          Length = 310

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 240 SSCTSGSDRGC---GLRGNVRNDATKGSPARPGSCHGNEGTECSSSGKP 103
           S  + GS +GC   G  G        G P RPG+C GN G     +G P
Sbjct: 99  SRVSGGSCQGCCLPGPPGTPGPAGRPGKPGRPGAC-GNHGNPGKPTGLP 146


>Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.6 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
 Frame = -2

Query: 243 NSSCTSGSDRGCGLRGNVRNDATKGSPARPG--SCHGNEGTECSSSGKPTRSIRP 85
           N+    GS  GC L G      T G P RPG     G  G       +P   I P
Sbjct: 93  NTGSQGGSCSGCCLPGAAGPAGTPGKPGRPGRPGAAGLPGNPGRPPAQPCEPITP 147


>Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.5 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
 Frame = -2

Query: 243 NSSCTSGSDRGCGLRGNVRNDATKGSPARPG--SCHGNEGTECSSSGKPTRSIRP 85
           N+    GS  GC L G      T G P RPG     G  G       +P   I P
Sbjct: 93  NTGSQGGSCSGCCLPGAAGPAGTPGKPGRPGRPGAAGLPGNPGRPPAQPCEPITP 147


>Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.1 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
 Frame = -2

Query: 243 NSSCTSGSDRGCGLRGNVRNDATKGSPARPG--SCHGNEGTECSSSGKPTRSIRP 85
           N+    GS  GC L G      T G P RPG     G  G       +P   I P
Sbjct: 93  NTGSQGGSCSGCCLPGAAGPAGTPGKPGRPGRPGAAGLPGNPGRPPAQPCEPITP 147


>Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical
           protein F22D6.10 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 228 SGSDRGCGLRGNVRNDATKGSPARPGS--CHGNEGTECSSSGKPTRSIRPGS 79
           SG++   G RG+  N    G+P R GS    G +GT     G+P    +PGS
Sbjct: 169 SGNEGPTGPRGSPGNKGRDGNPGRDGSPGRPGRDGTR--GVGQPGSPGQPGS 218


>U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protein
           34 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = -2

Query: 333 VSALRHIPRSERRTYASMNIDRLLGFSYV*NSSCTSGSDRGCGLRGNVRNDATKGSPARP 154
           V AL+ +P S R    + N   + G          SGS   C L G      T G P RP
Sbjct: 64  VHALKSLPNSNRTARQAYNDAAVTG------GGAQSGSCESCCLPGPPGPAGTPGKPGRP 117

Query: 153 G 151
           G
Sbjct: 118 G 118


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = -2

Query: 333 VSALRHIPRSERRTYASMNIDRLLGFSYV*NSSCTSGSDRGCGLRGNVRNDATKGSPARP 154
           V AL+ +P S R    + N   + G          SGS   C L G      T G P RP
Sbjct: 64  VHALKSLPNSNRTARQAYNDAAVTG------GGAQSGSCESCCLPGPPGPAGTPGKPGRP 117

Query: 153 G 151
           G
Sbjct: 118 G 118


>AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular
           collagen RAM-4 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = -2

Query: 333 VSALRHIPRSERRTYASMNIDRLLGFSYV*NSSCTSGSDRGCGLRGNVRNDATKGSPARP 154
           V AL+ +P S R    + N   + G          SGS   C L G      T G P RP
Sbjct: 64  VHALKSLPNSNRTARQAYNDAAVTG------GGAQSGSCESCCLPGPPGPAGTPGKPGRP 117

Query: 153 G 151
           G
Sbjct: 118 G 118


>U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protein
           164 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 243 NSSCTSGSDRGCGLRGNVRNDATKGSPARPGSCHGNEGT 127
           + SC +G     G  G    D T G+P + G+   NE T
Sbjct: 101 DDSCPAGPKGESGSAGEPGTDGTDGTPGKDGADGSNEQT 139


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
           protein F07G11.9 protein.
          Length = 2025

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -2

Query: 216 RGCGLRGNVRNDATKGSPARPGSCHGNEGTECSSSGKPTRSIRPGSMCS*SMSAH 52
           RG G  G   N     +PA   S  GN  T  S  G+ T  ++ G  C    SAH
Sbjct: 511 RGPG-NGVTNNPRATTAPATRPSNQGNNSTSTSQCGQKT-EVKEGDTCFKIWSAH 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,424,584
Number of Sequences: 27780
Number of extensions: 419780
Number of successful extensions: 1436
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)