Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0091
(847 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969... 43 2e-04
At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969... 40 0.002
At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969... 33 0.32
At3g05620.1 68416.m00624 pectinesterase family protein contains ... 29 5.1
At4g28990.1 68417.m04143 RNA-binding protein-related contains we... 28 6.8
At2g19400.1 68415.m02263 protein kinase, putative contains prote... 28 6.8
At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein family... 28 9.0
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 28 9.0
At2g45760.1 68415.m05692 BON1-associated protein (BAP1)-related ... 28 9.0
>At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969
Pollen specific protein SF21 {Helianthus annuus};
contains Pfam profile PF03096: Ndr family
Length = 346
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 3 GANVLARFALIHPKKVDALTLINCTSNQAGWIEWAYQKMNTRSLRSRGMTQGVLDYLLWH 182
GA +L FA+ H ++V L L++ W EW Y K+ T L GM V ++LL
Sbjct: 128 GAYILTLFAMKHRERVLGLILVSPLCKAPSWSEWFYNKVITNLLYYYGMCGVVKEFLLQR 187
Query: 183 HFGR 194
+F +
Sbjct: 188 YFSK 191
>At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969
Pollen specific protein SF21 {Helianthus annuus};
contains Pfam profile PF03096: Ndr family
Length = 347
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 3 GANVLARFALIHPKKVDALTLINCTSNQAGWIEWAYQKMNTRSLRSRGMTQGVLDYLLWH 182
GA +L+ FA+ H ++V L LI+ W EW Y K+ + L GM+ + D L
Sbjct: 128 GAYILSLFAIKHKERVLGLILISPLCKAPSWSEWFYYKVVSNLLYYYGMSGLLKDIFLQR 187
Query: 183 HFGR 194
+F +
Sbjct: 188 YFSK 191
>At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969
Pollen specific protein SF21 {Helianthus annuus};
contains Pfam profile PF03096: Ndr family
Length = 344
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 3 GANVLARFALIHPKKVDALTLINCTSNQAGWIEWAYQKMNTRSLRSRGMTQGVLDYLLWH 182
GA +L FA+ + ++V L L++ W EW K+ + L G V + LL
Sbjct: 128 GAYILTLFAMKYRQRVLGLILVSPLCQAPSWSEWLCNKVMSNLLYYYGTCGVVKEMLLKR 187
Query: 183 HFGRFPEDRNH 215
+F + H
Sbjct: 188 YFSKEVRGNGH 198
>At3g05620.1 68416.m00624 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 543
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 389 TVTFNGRLNPNNSTWMKISDCAMVLEEQPSKISEAFRLFLR 511
T+T GR +PN +T I + + VL QP+ + ++L+ R
Sbjct: 416 TITAQGRKSPNQNTGFVIQN-SYVLATQPTYLGRPWKLYSR 455
>At4g28990.1 68417.m04143 RNA-binding protein-related contains weak
similarity to Swiss-Prot:Q01844 RNA-binding protein EWS
(EWS oncogene)(Ewing sarcoma breakpoint region 1
protein) [Homo sapiens]
Length = 347
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 222 SDRGCGLRGNVRNDATKGSPARPGSCHGNEGTECSSSGKPTR 97
SDR G G R A+ SP R G G++ + SG P R
Sbjct: 55 SDRYKGDNGGHRTRASSSSPGRRGYEDHKHGSDLNHSGVPPR 96
>At2g19400.1 68415.m02263 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 527
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 245 HT*LNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALS 373
H + P NL + +++ SD G+C+ D + +N+ L+
Sbjct: 226 HRDIKPDNLLLDKYGHMKLSDFGLCKPLDCRNISAMNVNEPLN 268
>At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein family
protein Common family member At4g25620 [Arabidopsis
thaliana]
Length = 438
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 359 TGALSPHVDDTVTFNGRLNPNNSTW 433
+GAL+P+ + V+ G L PNN+TW
Sbjct: 287 SGALTPNGPEIVS--GNLTPNNTTW 309
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 243 NSSCTSGSDRGCGLRGNVRNDATKGSPARPGSCHGNEGTECSSS 112
+ S + GS G G D+T GSP S G G+ SS
Sbjct: 517 SESASGGSATAGGASGGTYTDSTGGSPTGSPSAGGPSGSASESS 560
>At2g45760.1 68415.m05692 BON1-associated protein (BAP1)-related
similar to BON1-associated protein 1 BAP1 [Arabidopsis
thaliana] GI:15487384; contains Pfam profile PF00168: C2
domain
Length = 207
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 254 LNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALSP 376
+N S + IE Y R S G +N K+PV + G +P
Sbjct: 66 INASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFAP 106
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,647
Number of Sequences: 28952
Number of extensions: 380316
Number of successful extensions: 1050
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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