Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0090
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    27   1.2  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   2.1  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   4.9  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    25   6.5  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    24   8.6  
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    24   8.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   8.6  

>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 12  VLARFALIHPXKVDALTLINCTSNQAGWIEWAYQKMNTR 128
           VLA F L+    ++AL  I+   ++  WIEW Y+   T+
Sbjct: 32  VLAFFCLLGLDLLNALNTID-DDDKKSWIEWIYKNYVTK 69


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 51  DALTLINCTSNQAGWIEWAYQKMNTRSLRSRGM 149
           ++ TLIN  S  +GW++  +Q+++ + L  + M
Sbjct: 748 ESFTLINTVSLVSGWLKMLHQRIDYKILTEKVM 780


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 119 EHSVPSFPWHDP 154
           +HS+PSFP +DP
Sbjct: 53  DHSIPSFPENDP 64


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 207 GLRGNVRNDATKGSPARPGSCHGNEGTECS 118
           G   N+++   + SP   G   G+ GTECS
Sbjct: 71  GYLNNLKDTTNRDSPFFYGLFDGHGGTECS 100


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 80  EPGRMDRVGLPEDEHSVPSFPWHDPGRA 163
           +P    RVG+ E   +VPS P+ D  R+
Sbjct: 212 DPRDRSRVGILEIPSTVPSTPYSDNSRS 239


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 209 AVFGETSEMMPQKVVQHAL 153
           AV  ETS ++PQ+V+ H L
Sbjct: 4   AVSSETSTIVPQQVIVHPL 22


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 261  GFSYV*NSXCTSGSDRGCGLRGNVRNDATKGSPARPGSCHGNEGTECSSSGKPTRSI 91
            GF  V N+  TSGSD       +V+  +T  S +   S   +  T  ++S K + S+
Sbjct: 971  GFQTVSNTTATSGSD------DDVKTASTSSSTSYTSSSSSSSSTTSAASSKASVSM 1021


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,605
Number of Sequences: 5004
Number of extensions: 36835
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)