Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0090
(426 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.025
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27) 30 0.70
SB_16037| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_25856| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.4) 27 4.9
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 27 4.9
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
>SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 55.6 bits (128), Expect = 2e-08
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Frame = +2
Query: 254 LNPSNLSMFIEAYVXRSDLGICR------NADTIKVPVLNITGALSPHVDDTVTFNGRLN 415
LNP NL++FI +Y+ R+++ I R N ++K P L +TG SPH DD V N RL+
Sbjct: 189 LNPHNLALFINSYITRTNIDIVRPVEGGPNPRSLKCPTLLVTGTFSPHGDDVVESNSRLD 248
Query: 416 P 418
P
Sbjct: 249 P 249
Score = 44.8 bits (101), Expect = 3e-05
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +3
Query: 126 RSLRSRGMTQGVLDYLLWHHFGRFPEDRNHDLTQMY 233
R L ++G+T V DYLLWHHFG ++ N DL+ Y
Sbjct: 146 RQLHNKGLTTFVEDYLLWHHFGEKTKEENLDLSSAY 181
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 35.1 bits (77), Expect = 0.025
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 132 LRSRGMTQGVLDYLLWHHFGRFPEDRNHDL 221
L ++G T+G +YL WHHF R ++ D+
Sbjct: 862 LNAKGFTEGTANYLKWHHFERVGGEKRKDI 891
>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
Length = 1307
Score = 30.3 bits (65), Expect = 0.70
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 367 STRDVQHRHLDGVGVXAYTQVGAXHVRLNEHRQV 266
STR++ R L+G Y ++ A RLN HR V
Sbjct: 1272 STREISSRCLEGETSVRYPEIAAELERLNRHRSV 1305
>SB_16037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 219 DRGCGLRGNVRNDATKGSPARP 154
++ CGL G VRN T SP +P
Sbjct: 52 EKSCGLDGRVRNVTTFSSPGKP 73
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +3
Query: 210 NHDLTQMYXN-YFTRN*TPATCRCSLRRTCXAPTWVYAXTPTPSRCRC 350
NH L Q + YF T RC T++ + +P RCRC
Sbjct: 313 NHTLIQNEKHRYFALKRVLVTGRCECHGHAQKVTFIKGNSSSPGRCRC 360
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 174 KGSPARPGSCHGNEGTECSSSGKPTRSIRPG 82
KG P PG C N GT +++ PT +PG
Sbjct: 3240 KGCPCEPGGCF-NNGTCMANATIPTCKCQPG 3269
>SB_25856| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.4)
Length = 296
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 159 VLDYLLWHHFGRFP 200
+LDYLLW FGR P
Sbjct: 1 MLDYLLWPFFGRLP 14
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 183 DATKGSPARPGSCHGNEGTECSSSGKPTRSIRPGSMC 73
D G P+ +C + G C S+ K ++I P S C
Sbjct: 364 DQLAGDPSCTWACQTSAGGSCGSATKVGQTIIPASTC 400
>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1422
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 131 PSFPWHDPGRAGLPFVASFRTFPRRPQPRSDPDVQXL 241
PSF HD +P S P P+P DPD Q L
Sbjct: 129 PSFELHDD----VPQAPSDEKIPEAPRPVKDPDFQPL 161
>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 228 SGSDRGCGLRGNVRNDATKGSPARPGSCHGNEGT--ECSSSGKPTRSIRPGS 79
SG+ G G V + +G P +PG+ G EG G+P + PGS
Sbjct: 293 SGAPGLIGAEGPVGEEGGRGRPGKPGA-DGPEGLPGPAGDDGRPGENGAPGS 343
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,609
Number of Sequences: 59808
Number of extensions: 335452
Number of successful extensions: 754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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