Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0090
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 201 RGNVRNDATKGSPARPGS 148
           RG+V N +  GSP  P S
Sbjct: 311 RGSVHNGSNNGSPRSPES 328


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 48  VDALTLINCTSNQAGWIEWAYQKMNTRSLRSRG 146
           + +L L+N + N   W ++A+   N + L   G
Sbjct: 548 IASLLLLNLSENHIEWFDYAFIPGNLKWLDIHG 580



 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 102  WAYQKMNTRSLRSR-GMTQG 158
            WAY K   R LR++ G + G
Sbjct: 1025 WAYSKYGLRFLRAKPGKSSG 1044


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 221 QIVVAVFGETSEMMPQKVVQHALGH 147
           ++ + +FG    +M +++ Q A GH
Sbjct: 54  KLAMKLFGSKKALMKERIRQKAAGH 78


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 221 QIVVAVFGETSEMMPQKVVQHALGH 147
           ++ + +FG    +M +++ Q A GH
Sbjct: 54  KLAMKLFGSKKALMKERIRQKAAGH 78


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 221 QIVVAVFGETSEMMPQKVVQHALGH 147
           ++ + +FG    +M +++ Q A GH
Sbjct: 54  KLAMKLFGSKKALMKERIRQKAAGH 78


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 254 LNPSNLSMFIEAYVXRSDLGICRNAD 331
           L P NL +  + YV   D G  +  D
Sbjct: 492 LKPENLLLDSQGYVKLVDFGFAKRLD 517


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -2

Query: 314 YPGRSAARTPQ*-TSTGCWGSVTCEIVXVHLGQ---IVVAVFGETSEMMP 177
           + G SA+ +P   T++  +  V+      H  Q   +  A FG TS M+P
Sbjct: 71  HSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMVP 120


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = +2

Query: 107 LPEDEHSVPSF----PWHDPGRAGLPFVASFRTFPRRPQPRS 220
           +PE     PS     P  +PG   + F    R  PR  +PR+
Sbjct: 123 VPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRT 164


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 325 RRHHQGAGVEHHGCSVTSRRRHGYLQRTSQPEQ 423
           +RHH      HH  S   +  H   Q+  Q +Q
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQ 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,074
Number of Sequences: 438
Number of extensions: 2838
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)