Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0090
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969...    42   1e-04
At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969...    39   0.001
At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969...    32   0.19 
At4g28990.1 68417.m04143 RNA-binding protein-related contains we...    28   2.3  
At2g19400.1 68415.m02263 protein kinase, putative contains prote...    27   5.3  
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    27   7.0  
At3g14890.2 68416.m01883 phosphoesterase identical to phosphoest...    26   9.3  
At3g14890.1 68416.m01882 phosphoesterase identical to phosphoest...    26   9.3  

>At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 346

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +3

Query: 3   GANVLARFALIHPXKVDALTLINCTSNQAGWIEWAYQKMNTRSLRSRGMTQGVLDYLLWH 182
           GA +L  FA+ H  +V  L L++       W EW Y K+ T  L   GM   V ++LL  
Sbjct: 128 GAYILTLFAMKHRERVLGLILVSPLCKAPSWSEWFYNKVITNLLYYYGMCGVVKEFLLQR 187

Query: 183 HFGR 194
           +F +
Sbjct: 188 YFSK 191


>At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 347

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +3

Query: 3   GANVLARFALIHPXKVDALTLINCTSNQAGWIEWAYQKMNTRSLRSRGMTQGVLDYLLWH 182
           GA +L+ FA+ H  +V  L LI+       W EW Y K+ +  L   GM+  + D  L  
Sbjct: 128 GAYILSLFAIKHKERVLGLILISPLCKAPSWSEWFYYKVVSNLLYYYGMSGLLKDIFLQR 187

Query: 183 HFGR 194
           +F +
Sbjct: 188 YFSK 191


>At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 344

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 3   GANVLARFALIHPXKVDALTLINCTSNQAGWIEWAYQKMNTRSLRSRGMTQGVLDYLLWH 182
           GA +L  FA+ +  +V  L L++       W EW   K+ +  L   G    V + LL  
Sbjct: 128 GAYILTLFAMKYRQRVLGLILVSPLCQAPSWSEWLCNKVMSNLLYYYGTCGVVKEMLLKR 187

Query: 183 HFGRFPEDRNH 215
           +F +      H
Sbjct: 188 YFSKEVRGNGH 198


>At4g28990.1 68417.m04143 RNA-binding protein-related contains weak
           similarity to Swiss-Prot:Q01844 RNA-binding protein EWS
           (EWS oncogene)(Ewing sarcoma breakpoint region 1
           protein) [Homo sapiens]
          Length = 347

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 222 SDRGCGLRGNVRNDATKGSPARPGSCHGNEGTECSSSGKPTR 97
           SDR  G  G  R  A+  SP R G      G++ + SG P R
Sbjct: 55  SDRYKGDNGGHRTRASSSSPGRRGYEDHKHGSDLNHSGVPPR 96


>At2g19400.1 68415.m02263 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 527

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 245 HT*LNPSNLSMFIEAYVXRSDLGICRNADTIKVPVLNITGALS 373
           H  + P NL +    ++  SD G+C+  D   +  +N+   L+
Sbjct: 226 HRDIKPDNLLLDKYGHMKLSDFGLCKPLDCRNISAMNVNEPLN 268


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 346 GVEHHGCSVTSRRRHGYLQR 405
           G+EH+GC V    R G+LQ+
Sbjct: 817 GLEHYGCMVDLLGRAGFLQK 836


>At3g14890.2 68416.m01883 phosphoesterase identical to
           phosphoesterase [Arabidopsis thaliana] GI:21630064;
           contains Pfam profile PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region
          Length = 638

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 114 KMNTRSLR----SRGMTQGVLDYLLWHHFGRFPED 206
           K+  +SLR    S+G  +G +D   WHHF  FP D
Sbjct: 21  KIAVKSLRLGLISKG--RGGVDMTRWHHFDCFPTD 53


>At3g14890.1 68416.m01882 phosphoesterase identical to
           phosphoesterase [Arabidopsis thaliana] GI:21630064;
           contains Pfam profile PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region
          Length = 694

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 114 KMNTRSLR----SRGMTQGVLDYLLWHHFGRFPED 206
           K+  +SLR    S+G  +G +D   WHHF  FP D
Sbjct: 68  KIAVKSLRLGLISKG--RGGVDMTRWHHFDCFPTD 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,721,210
Number of Sequences: 28952
Number of extensions: 210084
Number of successful extensions: 556
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)