Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0085
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 100 5e-22
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 43 6e-05
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 41 2e-04
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.8
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 28 1.8
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 7.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 9.5
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 99.5 bits (237), Expect = 5e-22
Identities = 67/179 (37%), Positives = 89/179 (49%), Gaps = 5/179 (2%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGPSISASSARRLYFSVV*KCPLR----STNLP 339
NPLF RP++F IGQ IQP RDLSRFV P RR ++ K P L
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 340 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQNSHQ 519
++ + +++ T +S + P N
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS---KKPYNVKYGLNHVV 140
Query: 520 AGREEEGA-LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKNMHMLS 693
A E + A LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+K +L+
Sbjct: 141 ALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLA 199
Score = 77.8 bits (183), Expect = 2e-15
Identities = 34/56 (60%), Positives = 43/56 (76%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 404
L + KWP+YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 46 LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657
+V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 51 IVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 517 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRK 675
+A R+ E LV++A D+ P++++ +P LC VPY K LG + K
Sbjct: 63 KAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTK 115
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 667 HRKNMHMLSSNKCGVW*PRFFSKVVGSHQDELSTSANE 780
H M LSS+ C +W F+ + +GS L TS E
Sbjct: 2300 HSHPMLKLSSSDCYLWSSSFYIEEIGSTHVRLMTSEGE 2337
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 683 CMFLRCTSAPRRDLPLTMQYGTPILRH 603
C+++ S P ++LP T++ T LRH
Sbjct: 770 CLYIPELSVPEQELPFTLEQATMDLRH 796
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 285 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 386
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 269 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 358
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 467 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 297
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,847
Number of Sequences: 5004
Number of extensions: 54282
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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