Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0085
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        85   5e-17
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   5e-17
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        43   3e-04
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          38   0.012
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   7.6  

>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 37/49 (75%), Positives = 45/49 (91%)
 Frame = +1

Query: 532 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKN 678
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+KN
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKN 107


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 37/49 (75%), Positives = 45/49 (91%)
 Frame = +1

Query: 532 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKN 678
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+KN
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKN 198



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 33/56 (58%), Positives = 45/56 (80%)
 Frame = +3

Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 404
           L +  +WP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET
Sbjct: 51  LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPET 106



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 22/30 (73%), Positives = 23/30 (76%)
 Frame = +1

Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP 261
           NPL EKRP+NF IG  IQP RDLSRFV  P
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWP 58


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +1

Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657
           +V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 517 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 645
           +A R+ E   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 108 KALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 482 PLWWRLIFLGNLSFSSFPQPLFPG 411
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,553,035
Number of Sequences: 59808
Number of extensions: 437126
Number of successful extensions: 1026
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)