Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0084
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    27   2.8  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   8.7  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 339 GGGTYPRGLTRGPATSNYANYNFASLIFLHDVIPSLWKSTVNI 211
           G G    G  R P+  N  N N    I LH ++PS ++  +++
Sbjct: 533 GEGGLLSGALRAPSQQNNNNSNTQHSINLHTIVPSPYEPPLSV 575


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 160 EHRCIASKRMHRTSYPLGHDDSNRPPITGSLQSVESENS 44
           EH+ + +  +++T  P  H  S+  PI+ S ++  S+ +
Sbjct: 506 EHQALNAAILNKTQLPYFHQSSSELPISASKRAALSQQT 544


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 142 SKRMHRTSYPLGHDDSNRPPITGSLQSVESENS 44
           ++R++ +S+P  HD+   P    S Q++ S +S
Sbjct: 76  NERLNSSSFPQIHDNQLSPSFNTSYQAIPSSSS 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,578
Number of Sequences: 5004
Number of extensions: 58967
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)