Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0084
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)                    28   7.0  

>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 637 VNTEATSVPTSHTLVRRPHDLTI*FNKLENYCFSFIFYCLDGWR 506
           V+    ++P  HT++++P DL     KLEN  +     C++ +R
Sbjct: 140 VDAVKLNLPDYHTIIKKPMDLGTIKKKLENNEYPCAQECIEDFR 183



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 637 VNTEATSVPTSHTLVRRPHDLTI*FNKLENYCF 539
           V+ EA  +   H ++++P D+T   NKLEN  +
Sbjct: 345 VDAEALGLHDYHDIIKQPMDMTEIKNKLENRAY 377


>SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)
          Length = 368

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 139 KRMHRTSYPLGHDDSNRPPITGSLQ 65
           KR+H+ S+ LGH+DS+    +G L+
Sbjct: 18  KRIHQVSHELGHEDSSSGSDSGYLE 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,203,401
Number of Sequences: 59808
Number of extensions: 455206
Number of successful extensions: 820
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)