BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0083 (743 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 98 7e-21 06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504... 92 4e-19 07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 29 3.9 >02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462, 4658808-4658873,4658954-4659076,4659562-4659629, 4659703-4659766,4659994-4660135,4660218-4660306, 4660574-4660637,4660870-4661021,4661124-4661261, 4661742-4661867,4661971-4662183,4662343-4662426, 4662583-4662742,4662993-4663126,4664047-4664136, 4664313-4664471,4665528-4665611,4666170-4666289, 4666338-4666391,4666899-4666945,4667556-4667598, 4667730-4668586,4668845-4668899 Length = 1081 Score = 97.9 bits (233), Expect = 7e-21 Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 3/87 (3%) Frame = +2 Query: 2 SPVVKAENLRFKEEGVRDIVKDVFLPWYNAFRFLMQNVERLVQEDHVDYRFNEKAI---R 172 SPVV+AE+LRF + GV +VKDVFLPWYNA+RFL+QN +RL E + +AI Sbjct: 611 SPVVRAESLRFNKNGVHGVVKDVFLPWYNAYRFLVQNAKRLEVEGLAVFSPINQAILLRS 670 Query: 173 ENVMDKWITSFTQSLIQFVKKEMAAYR 253 NV+D WI S T+SL+ FV++EM AYR Sbjct: 671 SNVLDHWIQSATESLVSFVRQEMDAYR 697 Score = 97.9 bits (233), Expect = 7e-21 Identities = 47/83 (56%), Positives = 58/83 (69%) Frame = +1 Query: 253 MYTVVPRLTKFIDHLTNWYVRMNRKRLKGDNGVQDCQVALDTLFGVLFDMVRVMAPFTPF 432 +YTVVP L K+ID+LTN YVR NRKRLKG G DC+++L TL+ L VMAPFTPF Sbjct: 698 LYTVVPYLVKYIDNLTNIYVRFNRKRLKGRTGEDDCRISLSTLYHALVTTCVVMAPFTPF 757 Query: 433 LTEFMYKTLRKLLPGDSLDSVHF 501 TE +Y+ LRK + S S+HF Sbjct: 758 FTEVLYQNLRK-VSSKSEKSIHF 779 Score = 39.1 bits (87), Expect = 0.004 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 17/74 (22%) Frame = +3 Query: 531 VDTNIERAVQRMQSVIELGRVLRDRKTIPIKYPLP----------------EMIVIHRDT 662 +D +E +V RM ++++L R +R+R P+K PL EM+V+H D Sbjct: 789 IDERVEHSVNRMMTIVDLARNIRERHNRPLKTPLRHAHYTTILFTQFLVLWEMVVVHPDN 848 Query: 663 XYLDDVK-SLGKYV 701 +L+D+ L +YV Sbjct: 849 DFLEDITGKLKEYV 862 >06_03_0921 + 25949453-25949986,25950150-25950188,25950380-25950445, 25950526-25950669,25951416-25951612,25952281-25952443, 25952760-25952873,25953304-25953401,25953964-25954042, 25954356-25954514,25954690-25954779,25955790-25955923, 25956513-25956672,25956826-25956909,25957000-25957167, 25957321-25957446,25958088-25958225,25958311-25958414, 25958832-25958895,25959229-25959317,25959393-25959534, 25959937-25960000,25960085-25960152,25960399-25960521, 25960604-25960669,25960857-25960962,25961076-25961167, 25961243-25961344 Length = 1170 Score = 92.3 bits (219), Expect = 4e-19 Identities = 45/80 (56%), Positives = 55/80 (68%) Frame = +1 Query: 262 VVPRLTKFIDHLTNWYVRMNRKRLKGDNGVQDCQVALDTLFGVLFDMVRVMAPFTPFLTE 441 VVP L K+ID+LTN YVR NRKRLKG G +DC+V+L TL+ L MAPFTPF TE Sbjct: 744 VVPYLVKYIDNLTNIYVRFNRKRLKGRTGEEDCRVSLSTLYHALVTTCVAMAPFTPFFTE 803 Query: 442 FMYKTLRKLLPGDSLDSVHF 501 +Y+ LRK+ DS+HF Sbjct: 804 TLYQNLRKVSTKPE-DSIHF 822 Score = 82.2 bits (194), Expect = 4e-16 Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 3/76 (3%) Frame = +2 Query: 2 SPVVKAENLRFKEEGVRDIVKDVFLPWYNAFRFLMQNVERLVQEDHVDYRFNEKAI---R 172 SPVV+AE+LRFK GV +VKDVFLPWYNA+RFL+QN +RL E + ++A Sbjct: 669 SPVVRAESLRFKRSGVFGVVKDVFLPWYNAYRFLVQNAKRLEIEGFSAFSPIDQASLLKS 728 Query: 173 ENVMDKWITSFTQSLI 220 NV+D WI S T+SL+ Sbjct: 729 SNVLDHWINSATESLV 744 Score = 52.8 bits (121), Expect = 3e-07 Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Frame = +3 Query: 534 DTNIERAVQRMQSVIELGRVLRDRKTIPIKYPLPEMIVIHRDTXYLDDVK-SLGKYVL 704 D +E++V RM ++I+L R +R+R +K PL EM+++H D +L+D+ L +YV+ Sbjct: 833 DERVEQSVNRMMTIIDLARNIRERHNKALKTPLKEMVIVHPDNEFLEDITGKLKEYVM 890 >07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431, 3422550-3422644,3423063-3423154,3423326-3423379, 3424221-3424273,3424472-3424539,3424777-3424852, 3425159-3425242,3425793-3425941,3426375-3426492, 3426583-3426699,3426950-3427170,3427503-3427536, 3427585-3427685,3427832-3427943,3428379-3428504, 3428579-3428716,3428808-3428858,3428938-3429050, 3430253-3430318,3430582-3430729,3430826-3430930, 3431017-3431118,3431495-3431567,3431647-3431813, 3431906-3432028 Length = 956 Score = 29.1 bits (62), Expect = 3.9 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = +1 Query: 307 YVRMNRKRLKGDNGVQDCQVALDTLFGVLFDMVRVMAPFTPFLTEFMYKTL 459 Y+ ++ RL +A L V ++++++ PF PF+TE +++ L Sbjct: 719 YIEASKTRLYHSGDDSASSMAQSVLLYVFENILKLLHPFMPFVTEELWQAL 769 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,181,019 Number of Sequences: 37544 Number of extensions: 356834 Number of successful extensions: 819 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 791 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 817 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1968901276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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