Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0083
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 98 7e-21
06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504... 92 4e-19
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 29 3.9
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 97.9 bits (233), Expect = 7e-21
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 SPVVKAENLRFKEEGVRDIVKDVFLPWYNAFRFLMQNVERLVQEDHVDYRFNEKAI---R 172
SPVV+AE+LRF + GV +VKDVFLPWYNA+RFL+QN +RL E + +AI
Sbjct: 611 SPVVRAESLRFNKNGVHGVVKDVFLPWYNAYRFLVQNAKRLEVEGLAVFSPINQAILLRS 670
Query: 173 ENVMDKWITSFTQSLIQFVKKEMAAYR 253
NV+D WI S T+SL+ FV++EM AYR
Sbjct: 671 SNVLDHWIQSATESLVSFVRQEMDAYR 697
Score = 97.9 bits (233), Expect = 7e-21
Identities = 47/83 (56%), Positives = 58/83 (69%)
Frame = +1
Query: 253 MYTVVPRLTKFIDHLTNWYVRMNRKRLKGDNGVQDCQVALDTLFGVLFDMVRVMAPFTPF 432
+YTVVP L K+ID+LTN YVR NRKRLKG G DC+++L TL+ L VMAPFTPF
Sbjct: 698 LYTVVPYLVKYIDNLTNIYVRFNRKRLKGRTGEDDCRISLSTLYHALVTTCVVMAPFTPF 757
Query: 433 LTEFMYKTLRKLLPGDSLDSVHF 501
TE +Y+ LRK + S S+HF
Sbjct: 758 FTEVLYQNLRK-VSSKSEKSIHF 779
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 17/74 (22%)
Frame = +3
Query: 531 VDTNIERAVQRMQSVIELGRVLRDRKTIPIKYPLP----------------EMIVIHRDT 662
+D +E +V RM ++++L R +R+R P+K PL EM+V+H D
Sbjct: 789 IDERVEHSVNRMMTIVDLARNIRERHNRPLKTPLRHAHYTTILFTQFLVLWEMVVVHPDN 848
Query: 663 XYLDDVK-SLGKYV 701
+L+D+ L +YV
Sbjct: 849 DFLEDITGKLKEYV 862
>06_03_0921 +
25949453-25949986,25950150-25950188,25950380-25950445,
25950526-25950669,25951416-25951612,25952281-25952443,
25952760-25952873,25953304-25953401,25953964-25954042,
25954356-25954514,25954690-25954779,25955790-25955923,
25956513-25956672,25956826-25956909,25957000-25957167,
25957321-25957446,25958088-25958225,25958311-25958414,
25958832-25958895,25959229-25959317,25959393-25959534,
25959937-25960000,25960085-25960152,25960399-25960521,
25960604-25960669,25960857-25960962,25961076-25961167,
25961243-25961344
Length = 1170
Score = 92.3 bits (219), Expect = 4e-19
Identities = 45/80 (56%), Positives = 55/80 (68%)
Frame = +1
Query: 262 VVPRLTKFIDHLTNWYVRMNRKRLKGDNGVQDCQVALDTLFGVLFDMVRVMAPFTPFLTE 441
VVP L K+ID+LTN YVR NRKRLKG G +DC+V+L TL+ L MAPFTPF TE
Sbjct: 744 VVPYLVKYIDNLTNIYVRFNRKRLKGRTGEEDCRVSLSTLYHALVTTCVAMAPFTPFFTE 803
Query: 442 FMYKTLRKLLPGDSLDSVHF 501
+Y+ LRK+ DS+HF
Sbjct: 804 TLYQNLRKVSTKPE-DSIHF 822
Score = 82.2 bits (194), Expect = 4e-16
Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Frame = +2
Query: 2 SPVVKAENLRFKEEGVRDIVKDVFLPWYNAFRFLMQNVERLVQEDHVDYRFNEKAI---R 172
SPVV+AE+LRFK GV +VKDVFLPWYNA+RFL+QN +RL E + ++A
Sbjct: 669 SPVVRAESLRFKRSGVFGVVKDVFLPWYNAYRFLVQNAKRLEIEGFSAFSPIDQASLLKS 728
Query: 173 ENVMDKWITSFTQSLI 220
NV+D WI S T+SL+
Sbjct: 729 SNVLDHWINSATESLV 744
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = +3
Query: 534 DTNIERAVQRMQSVIELGRVLRDRKTIPIKYPLPEMIVIHRDTXYLDDVK-SLGKYVL 704
D +E++V RM ++I+L R +R+R +K PL EM+++H D +L+D+ L +YV+
Sbjct: 833 DERVEQSVNRMMTIIDLARNIRERHNKALKTPLKEMVIVHPDNEFLEDITGKLKEYVM 890
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 307 YVRMNRKRLKGDNGVQDCQVALDTLFGVLFDMVRVMAPFTPFLTEFMYKTL 459
Y+ ++ RL +A L V ++++++ PF PF+TE +++ L
Sbjct: 719 YIEASKTRLYHSGDDSASSMAQSVLLYVFENILKLLHPFMPFVTEELWQAL 769
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,019
Number of Sequences: 37544
Number of extensions: 356834
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -