Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0083
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14622| Best HMM Match : DUF1441 (HMM E-Value=1.6)                  113   1e-25
SB_9076| Best HMM Match : Gas_vesicle_C (HMM E-Value=0.9)              28   9.2  

>SB_14622| Best HMM Match : DUF1441 (HMM E-Value=1.6)
          Length = 426

 Score =  113 bits (273), Expect = 1e-25
 Identities = 50/86 (58%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   SPVVKAENLRFKEEGVRDIVKDVFLPWYNAFRFLMQNVERLVQEDHVDYRFNEKAIRE-- 175
           SPVV+AE L+F+E+GV+D+VKDVFLPWYNA+RFL Q++++  +  +V++ ++E    E  
Sbjct: 7   SPVVRAETLKFQEKGVKDVVKDVFLPWYNAYRFLSQSIDQFQRVHNVNFAYDENNTMELH 66

Query: 176 NVMDKWITSFTQSLIQFVKKEMAAYR 253
           N+MDKWI SFTQSL+QFV +EM AYR
Sbjct: 67  NIMDKWILSFTQSLVQFVHQEMDAYR 92



 Score =  109 bits (261), Expect = 3e-24
 Identities = 49/89 (55%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
 Frame = +1

Query: 253 MYTVVPRLTKFIDHLTNWYVRMNRKRLKGDNGVQDCQVALDTLFGVLFDMVRVMAPFTPF 432
           +YTVVPRL KFI++LTNWYVR NRKRLKGD G +D   A+ TLFGV+  + ++MAPFTPF
Sbjct: 93  LYTVVPRLVKFIEYLTNWYVRFNRKRLKGDQGQEDAMQAIQTLFGVVLTITKLMAPFTPF 152

Query: 433 LTEFMYKTLRKLLPGDSL----DSVHFNM 507
           LTE +Y+ ++  +  D      DS+H+ M
Sbjct: 153 LTEHIYQNMKPFIVFDESEKENDSIHYLM 181



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = +3

Query: 510 PDPRIELVDTNIERAVQRMQSVIELGRVLRDRKTIPIKYPLPEMIVIHRDTXYLDDVKSL 689
           P  R  L+ T IERAV RMQ+ IELGRV+RDR TIP K  +  ++ +  D   LD+   L
Sbjct: 296 PKTRENLIHTEIERAVSRMQATIELGRVVRDRMTIPTKILI--LLDVTPDQKMLDE--GL 351

Query: 690 GKYVLGRDE--RKKIG 731
            +  + R +  RKK G
Sbjct: 352 AREFVNRIQKLRKKAG 367



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +3

Query: 510 PDPRIELVDTNIERAVQRMQSVIELGRVLRDRKTIPIK 623
           P  R  L+ T IERAV RMQ+ IELGRV+RDR TIP K
Sbjct: 183 PKTRENLIHTEIERAVSRMQATIELGRVVRDRMTIPTK 220



 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +1

Query: 415 APFTPFLTEFMYKTLRKLLPGDSL----DSVHFNM 507
           APFTPFLTE +Y+ ++  +  D      DS+H+ M
Sbjct: 260 APFTPFLTEHIYQNMKPFIVFDESEKENDSIHYLM 294


>SB_9076| Best HMM Match : Gas_vesicle_C (HMM E-Value=0.9)
          Length = 305

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 400 MVRVMAPFTPFLTEFMYKTLRKLLPGDSL 486
           +++++ P+ PF+TE MY  + +   GD L
Sbjct: 178 LLQLLHPYMPFVTEEMYHLMNERKDGDDL 206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,780,951
Number of Sequences: 59808
Number of extensions: 445555
Number of successful extensions: 1065
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)