Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0082
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 154 1e-38
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 151 1e-37
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.8
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 6.6
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 6.6
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 8.7
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 25 8.7
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 154 bits (374), Expect = 1e-38
Identities = 88/158 (55%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Frame = +2
Query: 260 LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 439
LV++G+ I V +ERDP I W +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS
Sbjct: 67 LVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSK 126
Query: 440 DAPMFVVGVNLEAYDPSFKVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQK 619
DAPMFVVGVNLE ++PS KVISN L L ++ T ATQK
Sbjct: 127 DAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQK 186
Query: 620 TVDGPSGK-IMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
TVDGPS K G N +STGAAKAVGKVIP
Sbjct: 187 TVDGPSKKDWRGGRGASAN--IIPSSTGAAKAVGKVIP 222
Score = 97.9 bits (233), Expect = 1e-21
Identities = 45/65 (69%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Frame = +3
Query: 78 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 254
K+GINGFGRIGR+VLR +I G QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE +
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64
Query: 255 DSLLL 269
L++
Sbjct: 65 GKLVI 69
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 151 bits (365), Expect = 1e-37
Identities = 86/158 (54%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Frame = +2
Query: 260 LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 439
LV++GN I V +ERDP I W +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS
Sbjct: 67 LVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSK 126
Query: 440 DAPMFVVGVNLEAYDPSFKVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQK 619
DAPM+VVGVN E ++PS KVISN L L ++ T ATQK
Sbjct: 127 DAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQK 186
Query: 620 TVDGPSGK-IMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
TVDGPS K G N +STGAAKAVGKVIP
Sbjct: 187 TVDGPSKKDWRGGRGASAN--IIPSSTGAAKAVGKVIP 222
Score = 100 bits (240), Expect = 2e-22
Identities = 46/65 (70%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
Frame = +3
Query: 78 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 254
K+GINGFGRIGR+VLR A + K QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64
Query: 255 DSLLL 269
L++
Sbjct: 65 GKLVI 69
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 594 NSSHQALNNFKVIMNNLCKWGKTVCGARRFEMTLKEGS 481
NSS NNF V+++NL T RR KEGS
Sbjct: 4 NSSELDSNNFNVLVDNLAGLSLTDEEVRRILSPRKEGS 41
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 442 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPWNGLRVPF*E-NGNFVTVN 266
+ +G +N +S + C +C G + ++ +P F +R+P NGN T+
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGFR--QQMRMPCNACNGNGRTIK 210
Query: 265 NK 260
+K
Sbjct: 211 HK 212
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 172 SSVLTIWFIFSSMIPP-MAVLRAVLRFRMIPCC 267
SS LT WF F +++ P +A++ A + M CC
Sbjct: 229 SSDLTRWFFFYTLLYPWIALVSAFVAETMTLCC 261
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 93 GFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 203
GF RI +R EKG QVV D I + + +L+
Sbjct: 298 GFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 2 LHLVLSVRGGGQLFNK 49
LHLVL +RGG Q+F K
Sbjct: 67 LHLVLRLRGGMQIFVK 82
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 2 LHLVLSVRGGGQLFNK 49
LHLVL +RGG Q+F K
Sbjct: 143 LHLVLRLRGGMQIFVK 158
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 2 LHLVLSVRGGGQLFNK 49
LHLVL +RGG Q+F K
Sbjct: 219 LHLVLRLRGGMQIFVK 234
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 2 LHLVLSVRGGGQLFNK 49
LHLVL +RGG Q+F K
Sbjct: 295 LHLVLRLRGGMQIFVK 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,533
Number of Sequences: 5004
Number of extensions: 69147
Number of successful extensions: 228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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