Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0082
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             159   2e-39
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_41150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            29   4.0  
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   5.3  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                28   7.0  
SB_6995| Best HMM Match : DUF740 (HMM E-Value=2.4)                     28   7.0  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  159 bits (386), Expect = 2e-39
 Identities = 86/157 (54%), Positives = 101/157 (64%)
 Frame = +2

Query: 260  LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 439
            LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFTT +KA  HL+GGAKKVIISAPSA
Sbjct: 840  LVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFTTLEKAGFHLKGGAKKVIISAPSA 899

Query: 440  DAPMFVVGVNLEAYDPSFKVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQK 619
            DAPMFV+GVN E YDPS  V+SN       L  L ++                   ATQK
Sbjct: 900  DAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKVINDNFGLEEGLMTTIHAYTATQK 959

Query: 620  TVDGPSGKIMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
            TVDGPS K         ++    ASTGAAKAVGKVIP
Sbjct: 960  TVDGPSAKNWRDGRGA-HQNVIPASTGAAKAVGKVIP 995



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 192 VYLFKYDSTHGRFKGSVEVQDDSLLL 269
           VY+FKYDSTHGRFKG+VE +D  L++
Sbjct: 817 VYMFKYDSTHGRFKGTVEAKDGKLVI 842


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 34  SVIQQIFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 156
           S+ + +FY   I+C+KL S+D+ AL  + S  LL   +K S
Sbjct: 24  SLPKTVFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64


>SB_41150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 105 IGRLVLRASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQDDS 260
           IG  V+  ++ +G Q   I   F  LDY V LFKY     +  G   ++DD+
Sbjct: 34  IGEPVMGRNLGEGLQ--GIPQLFKKLDYNVTLFKYSCITPKHSGGFTLKDDN 83


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 429 LPVLMPPCLLWVLT*KLMTPLLRSSQIFL 515
           +PV+MP CL  +   K+M PLL  +++ L
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 426 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 292
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 249  QDDSLLLTVTKLPFSQKGTLRPFHGEKLGLNML*SLLVSLPLQIKHLLT 395
            Q   L  +V  LPF  K  L         +  L + +  LP+ +KHLLT
Sbjct: 1188 QSSQLTASVMHLPFPGKHLLTSVMHFHASVTQLPASVTQLPVSVKHLLT 1236


>SB_6995| Best HMM Match : DUF740 (HMM E-Value=2.4)
          Length = 671

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +2

Query: 299 RDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEA 478
           + P+A+P       +  +ST + T       H+  GA    ISA         + +  E+
Sbjct: 565 KKPEALPIMPIEQTFEDDST-ILTKRSSTRRHIPKGALFGAISAGRPRQLGSRIPLRSES 623

Query: 479 YDPSFKVISNLLAPQTV 529
           + PSFK ++ L  PQ +
Sbjct: 624 FSPSFKRLTRLRDPQVI 640


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,174,189
Number of Sequences: 59808
Number of extensions: 516802
Number of successful extensions: 1146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)