Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0082
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenas... 147 8e-36
At1g16300.1 68414.m01951 glyceraldehyde 3-phosphate dehydrogenas... 145 3e-35
At1g13440.1 68414.m01570 glyceraldehyde 3-phosphate dehydrogenas... 137 8e-33
At3g04120.1 68416.m00436 glyceraldehyde-3-phosphate dehydrogenas... 136 1e-32
At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenas... 93 1e-19
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas... 90 2e-18
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 81 8e-16
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil... 30 1.9
At5g52050.1 68418.m06460 MATE efflux protein-related contains Pf... 29 3.3
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi... 29 3.3
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi... 29 3.3
At2g44030.1 68415.m05474 kelch repeat-containing F-box family pr... 29 3.3
At4g01330.1 68417.m00173 protein kinase family protein contains ... 29 4.3
At1g21440.1 68414.m02681 mutase family protein similar to carbox... 28 5.7
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00... 28 7.6
At3g63330.1 68416.m07125 protein kinase family protein contains ... 27 10.0
>At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative
similar to glyceraldehyde-3-phosphate dehydrogenase
[Pinus sylvestris] GI:1100223; contains Pfam profiles
PF02800: Glyceraldehyde 3-phosphate dehydrogenase
C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 422
Score = 147 bits (356), Expect = 8e-36
Identities = 81/158 (51%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Frame = +2
Query: 260 LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 439
L +NG K+ V S+RDP IPW GA+YVVES+GVFTT KA++HL+GGAKKVIISAPSA
Sbjct: 151 LEINGKKVNVVSKRDPSEIPWADLGADYVVESSGVFTTLSKAASHLKGGAKKVIISAPSA 210
Query: 440 DAPMFVVGVNLEAYDPSFKVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQK 619
DAPMFVVGVN Y P+ ++SN L L ++ ATQK
Sbjct: 211 DAPMFVVGVNEHTYQPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQK 270
Query: 620 TVDGPSGK-IMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
TVDGPS K G ++ +STGAAKAVGKV+P
Sbjct: 271 TVDGPSMKDWRGGRGA--SQNIIPSSTGAAKAVGKVLP 306
Score = 91.9 bits (218), Expect = 4e-19
Identities = 43/65 (66%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Frame = +3
Query: 75 SKIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQ 251
+K+GINGFGRIGRLVLR A+ +VVA+NDPFI YM Y+ KYDSTHG FKGS+ V
Sbjct: 87 TKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMLKYDSTHGNFKGSINVI 146
Query: 252 DDSLL 266
DDS L
Sbjct: 147 DDSTL 151
>At1g16300.1 68414.m01951 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative
similar to glyceraldehyde-3-phosphate dehydrogenase
[Pinus sylvestris] GI:1100223; contains Pfam profiles
PF02800: Glyceraldehyde 3-phosphate dehydrogenase
C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 420
Score = 145 bits (351), Expect = 3e-35
Identities = 81/158 (51%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = +2
Query: 260 LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 439
L +NG ++ V S+RDP IPW GAEYVVES+GVFTT +AS+HL+GGAKKVIISAPSA
Sbjct: 149 LEINGKQVKVVSKRDPAEIPWADLGAEYVVESSGVFTTVGQASSHLKGGAKKVIISAPSA 208
Query: 440 DAPMFVVGVNLEAYDPSFKVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQK 619
DAPMFVVGVN + Y P+ ++SN L L ++ ATQK
Sbjct: 209 DAPMFVVGVNEKTYLPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQK 268
Query: 620 TVDGPSGK-IMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
TVDGPS K G ++ +STGAAKAVGKV+P
Sbjct: 269 TVDGPSMKDWRGGRGA--SQNIIPSSTGAAKAVGKVLP 304
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/65 (64%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +3
Query: 75 SKIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQ 251
+K+GINGFGRIGRLVLR A+ +VVA+NDPFI YM Y+FKYDSTHG +KG++ V
Sbjct: 85 TKVGINGFGRIGRLVLRIATFRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNYKGTINVI 144
Query: 252 DDSLL 266
DDS L
Sbjct: 145 DDSTL 149
>At1g13440.1 68414.m01570 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative very
strong similarity to SP|P25858 Glyceraldehyde
3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12)
{Arabidopsis thaliana}; contains Pfam profiles PF02800:
Glyceraldehyde 3-phosphate dehydrogenase C-terminal
domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 338
Score = 137 bits (331), Expect = 8e-33
Identities = 78/158 (49%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
Frame = +2
Query: 260 LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 439
L+ + VF R+P+ IPWG+AGA++VVESTGVFT DKA+AHL+GGAKKV+ISAPS
Sbjct: 71 LLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 130
Query: 440 DAPMFVVGVNLEAYDPSFKVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQK 619
DAPMFVVGVN Y ++SN L L ++ ATQK
Sbjct: 131 DAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQK 190
Query: 620 TVDGPSGK-IMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
TVDGPS K G N +STGAAKAVGKV+P
Sbjct: 191 TVDGPSMKDWRGGRAASFN--IIPSSTGAAKAVGKVLP 226
Score = 83.8 bits (198), Expect = 1e-16
Identities = 39/72 (54%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 LADNMSKIGINGFGRIGRLVLRASIEKG-AQVVAINDPFIGLDYMVYLFKYDSTHGRFK- 233
+AD +IGINGFGRIGRLV R +++ ++VA+NDPFI +YM Y+FKYDS HG++K
Sbjct: 1 MADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKH 60
Query: 234 GSVEVQDDSLLL 269
++V+DD LL
Sbjct: 61 HELKVKDDKTLL 72
>At3g04120.1 68416.m00436 glyceraldehyde-3-phosphate dehydrogenase,
cytosolic (GAPC) / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase identical to
SP|P25858 Glyceraldehyde 3-phosphate dehydrogenase,
cytosolic (EC 1.2.1.12) {Arabidopsis thaliana}
Length = 338
Score = 136 bits (329), Expect = 1e-32
Identities = 78/158 (49%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Frame = +2
Query: 260 LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 439
L+ + VF R+P+ IPW +AGA+YVVESTGVFT DKA+AHL+GGAKKV+ISAPS
Sbjct: 71 LLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 130
Query: 440 DAPMFVVGVNLEAYDPSFKVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQK 619
DAPMFVVGVN Y ++SN L L ++ ATQK
Sbjct: 131 DAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQK 190
Query: 620 TVDGPSGK-IMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
TVDGPS K G N +STGAAKAVGKV+P
Sbjct: 191 TVDGPSMKDWRGGRAASFN--IIPSSTGAAKAVGKVLP 226
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/72 (51%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 LADNMSKIGINGFGRIGRLVLRASIEKG-AQVVAINDPFIGLDYMVYLFKYDSTHGRFK- 233
+AD +IGINGFGRIGRLV R +++ ++VA+NDPFI +YM Y+FKYDS HG++K
Sbjct: 1 MADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKH 60
Query: 234 GSVEVQDDSLLL 269
++++D+ LL
Sbjct: 61 NELKIKDEKTLL 72
>At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenase,
chloroplast, putative / NADP-dependent
glyceraldehydephosphate dehydrogenase, putative similar
to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A,
chloroplast precursor (EC 1.2.1.13) (NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A)
{Arabidopsis thaliana}; contains Pfam profiles PF02800:
Glyceraldehyde 3-phosphate dehydrogenase C-terminal
domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 399
Score = 93.5 bits (222), Expect = 1e-19
Identities = 56/158 (35%), Positives = 75/158 (47%), Gaps = 1/158 (0%)
Frame = +2
Query: 260 LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP-S 436
L V+G I + S+R+P +PWG+ G + V+E TGVF D A HL+ GAKKV+I+AP
Sbjct: 130 LSVDGKIIKIVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK 189
Query: 437 ADAPMFVVGVNLEAYDPSFKVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQ 616
D P +VVGVN E Y +ISN L ++ Q
Sbjct: 190 GDIPTYVVGVNAELYSHEDTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ 249
Query: 617 KTVDGPSGKIMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
+ +D + LN STGAAKAV V+P
Sbjct: 250 RLLDASHRDLRRARAAALNIVP--TSTGAAKAVALVLP 285
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 78 KIGINGFGRIGRLVLR---ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV 248
K+ INGFGRIGR LR + VV IND G+ +L KYDST G F V+
Sbjct: 66 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSTLGIFDADVKP 124
Query: 249 QDDSLL 266
DS L
Sbjct: 125 SGDSAL 130
>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
A, chloroplast (GAPA) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A
identical to SP|P25856 Glyceraldehyde 3-phosphate
dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit A) {Arabidopsis thaliana}
Length = 396
Score = 89.8 bits (213), Expect = 2e-18
Identities = 55/156 (35%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Frame = +2
Query: 266 VNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP-SAD 442
V+G I V S R+P +PW + G + V+E TGVF + A H+E GAKKVII+AP D
Sbjct: 129 VDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGD 188
Query: 443 APMFVVGVNLEAYDPSFKVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQKT 622
P +VVGVN +AY +ISN L ++ Q+
Sbjct: 189 IPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRL 248
Query: 623 VDGPSGKIMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
+D + LN STGAAKAV V+P
Sbjct: 249 LDASHRDLRRARAAALNIVP--TSTGAAKAVALVLP 282
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 78 KIGINGFGRIGRLVLR---ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV 248
K+ INGFGRIGR LR + ++AIND G+ +L KYDST G F V+
Sbjct: 63 KVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDADVKP 121
Query: 249 QDDSLL 266
++ +
Sbjct: 122 SGETAI 127
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 81.0 bits (191), Expect = 8e-16
Identities = 53/158 (33%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Frame = +2
Query: 266 VNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPS--A 439
V+G I V S RDP +PW + G + V+E TGVF A H++ GA KVII+AP+ A
Sbjct: 149 VDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVIITAPAKGA 208
Query: 440 DAPMFVVGVNLEAYDPSF-KVISNLLAPQTVLPHLQRLFMITXXXXXXXXXXFMPQLATQ 616
D P +V+GVN + Y +ISN L ++ Q
Sbjct: 209 DIPTYVMGVNEQDYGHDVANIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQ 268
Query: 617 KTVDGPSGKIMGVMXVVLNKTSFLASTGAAKAVGKVIP 730
+ +D + LN STGAAKAV V+P
Sbjct: 269 RLLDASHRDLRRARAAALNIVP--TSTGAAKAVSLVLP 304
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +3
Query: 78 KIGINGFGRIGRLVLR---ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV 248
K+ INGFGRIGR LR + +VV +ND G+ +L KYDS G FK V++
Sbjct: 83 KVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSG-GVKNASHLLKYDSMLGTFKAEVKI 141
Query: 249 QDDSLLLTVTKL 284
D+ + KL
Sbjct: 142 VDNETISVDGKL 153
>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Frame = +3
Query: 78 KIGINGFGRIGRLVLRASIEKGAQVVAINDPF------IGLDYMVYLFKYDSTHG--RFK 233
+ I GFG +G + +KG ++VA++D G+D + L + G F
Sbjct: 208 RFAIQGFGNVGSWAAKLISDKGGKIVAVSDVTGAIKNNNGIDILSLLEHAEENRGIKGFD 267
Query: 234 GSVEVQDDSLLL 269
G+ + DS+L+
Sbjct: 268 GADSIDPDSILV 279
>At5g52050.1 68418.m06460 MATE efflux protein-related contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 505
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -1
Query: 293 RKRQFCYR*QQGIILNLNTALKTAMGGIILEKINHIVKTDERVIYSDHLSSLFN 132
R C ++GIIL L T+L + + +EKI I+K D+++ H+ L++
Sbjct: 109 RYNYVCASVKRGIILLLVTSLPVTLLWMNMEKILLILKQDKKLASEAHIFLLYS 162
>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 87 INGFGRIGRLVLRASIEKGAQVVAIND 167
I GFG +G + EKG ++VA++D
Sbjct: 211 IQGFGNVGSWAAKLISEKGGKIVAVSD 237
>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
thaliana] SWISS-PROT:Q38946
Length = 411
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 87 INGFGRIGRLVLRASIEKGAQVVAIND 167
I GFG +G + EKG +VVA++D
Sbjct: 211 IQGFGNVGTWAAKLIHEKGGKVVAVSD 237
>At2g44030.1 68415.m05474 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 380
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 112 VWCSVLLLKRELKWSL*MTLSSVLTI 189
+WC+++LL+REL W + +V T+
Sbjct: 331 IWCALILLERELVWGVIEWSENVFTL 356
>At4g01330.1 68417.m00173 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 329
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -1
Query: 188 IVKTDERVIYSDHLSSLFNRSTEHQTANAAKS 93
I KT+ RV++SD +SS +R T +TA+ + S
Sbjct: 103 IGKTEHRVVFSDRVSSGESRGTVSETASYSGS 134
>At1g21440.1 68414.m02681 mutase family protein similar to
carboxyvinyl-carboxyphosphonate phosphorylmutase
GB:O49290 from [Arabidopsis thaliana]; similar to
carboxyphosphonoenolpyruvate mutase (GI:47149)
[Streptomyces hygroscopicus]; contains Prosite PS00161:
Isocitrate lyase signature
Length = 336
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 326 KAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAY 481
+ A + TG+ D+A+ ++E GA + AP D + +G + Y
Sbjct: 191 RTDARALSAKTGLSDAIDRANLYMEAGADASFVEAPRDDDELKEIGRRTKGY 242
>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 571
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 180 LDYMVYLFKYDSTHGRFKGSVEVQDDSLLLTVTKLPFSQKGTLRPFHGEKL 332
LD+ VY + T G G +++D+SLLL + S++G+ R G K+
Sbjct: 393 LDHDVYAGLWGGTFGWPPGK-DIEDESLLLLMLTYGESEEGSERILFGTKI 442
>At3g63330.1 68416.m07125 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 376
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 360 VSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLL 458
V+ L +H+ W E K+L Y+L LM C+L
Sbjct: 262 VTRALLDQHIRGWSENFKELAYKLRSLMEMCIL 294
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,575
Number of Sequences: 28952
Number of extensions: 375812
Number of successful extensions: 1134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -