Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0081
         (766 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.16 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   4.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = -3

Query: 359 LEVVHLCVAV---HDLYLHP--CP*LPLFSWNLLVCLYLVSYWCLFIIRRLSRIFCSGGS 195
           L  VHL + V   +  Y+H   C    +F+ +LL  L +  ++C  II      FC    
Sbjct: 247 LFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAFI 306

Query: 194 WRPTSFFKFFRL 159
             PT F+  F L
Sbjct: 307 IFPTHFYCAFSL 318



 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 293 LFSWNLLVCLYLVSYWCLFIIRRLSRIFC 207
           +F+ +LL  L +  ++C FII  +  +FC
Sbjct: 155 IFTVHLLFLLCIYHFFCAFIIFTMHLLFC 183


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 174 KKRGRPPAATRTKDSAKSSDDEQA 245
           K+R    AA R++D+ ++ +DE A
Sbjct: 141 KRRKNNEAAKRSRDARRAKEDEIA 164


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 111 VEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 242
           V++ G+ +P+    + ES E K    P  + + KDS+  S+DE+
Sbjct: 70  VQQAGK-KPENVKKEDESDEEK----PTTSFKLKDSSSDSEDER 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,756
Number of Sequences: 336
Number of extensions: 3298
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)