Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0081
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    31   0.24 
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   3.9  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    26   5.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   6.8  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    26   6.8  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   9.0  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.0  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.0  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   9.0  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   9.0  

>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 141 ANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEADQKVPRKKRE 299
           +N     + +++   RPPAA +   +A +S  + +PV NEV A+       RE
Sbjct: 181 SNAPPFNNTDVQASARPPAAGQDDSAADASTTKSSPVHNEVMAEPLPHSNNRE 233


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -1

Query: 250 TGACSSSEDLAESFVLVAAGGRPRFLSSFDSGCVPLAFG 134
           TG C    +    F +    G    L  F  GC+  +FG
Sbjct: 628 TGVCIEETEKRPVFTMFGISGMGNHLQIFGGGCICFSFG 666


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +3

Query: 162 SKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEADQKVPRKKRESR 305
           S++ ++    P A   + +++  ++E+     E EAD +    KR++R
Sbjct: 291 SQDTRESTAEPRAAGEESASEEEEEEEEEEEEENEADDETRENKRQNR 338


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 90  SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAK 224
           SD    VV++K   R + N  +  S  ++K+G  PAA  TK +AK
Sbjct: 384 SDGIHLVVDEKSNFREE-NFQRAMSALMEKQGDDPAAMATKGNAK 427


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 153 QPESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEADQKVPRKKRESRARVKVEVV 329
           +PE + LKK  R P  TR +   + S       + EV        KK    A VK+  +
Sbjct: 152 RPEDEFLKKMNRCPPLTREQAIFQISSGSNLYTSREVNDSISQRLKKFPKAANVKLRAI 210


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/69 (21%), Positives = 27/69 (39%)
 Frame = +3

Query: 117 KKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEADQKVPRKKR 296
           KKG  R     +  +   +     P   + TK++  S   +     NEVE+D +     +
Sbjct: 2   KKGGVRSYRRSSTSKRSVIDDDSEPELPSMTKEAIASHKADSGSSDNEVESDHESKSSSK 61

Query: 297 ESRARVKVE 323
           + +   K E
Sbjct: 62  KLKENAKEE 70


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 274 WSASTSLATGACSSSEDLAESFVL 203
           W++STS AT   SSS   ++S V+
Sbjct: 164 WNSSTSAATNTSSSSSSSSQSSVV 187


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 132 RPKANGTQPESKELKKRGRPPAATRTKDSAKSSD 233
           +P   G++P  K  +KRGRPP    +  S K  D
Sbjct: 112 KPIDEGSEPIIK--RKRGRPPKIKSSSPSTKLDD 143



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +3

Query: 93  DDGSTVVEKKGRGR-PKANGTQPESK---ELK-KRGR 188
           D+GS  + K+ RGR PK   + P +K    LK KRGR
Sbjct: 115 DEGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGR 151


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 156 PESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEAD 272
           P+S E+  R      TR ++S  S  DEQ    +EVE D
Sbjct: 144 PQSSEVD-RNSETEGTREENSNTSDWDEQNEYVSEVEGD 181


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 539 LVNSHVSSNLLNYRDSTTFSIEIISPKY 622
           L+++ ++SN  NY D+   S+ +  P Y
Sbjct: 462 LLDTSINSNWCNYEDTVQVSVRLNRPMY 489


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 545 NSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF 643
           N  +S + L YR+S  F I   +P  +  +G+F
Sbjct: 848 NDSISPSYLTYRESDGFGIASSNPSPAGSEGIF 880


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 147 GTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEADQKV----PRKKRESRARV 314
           G Q    ELKKR +  A    K   ++     APVA    + +K     P +  E+R+R 
Sbjct: 23  GEQVSKTELKKREKQRARELAKAKKQAEKAASAPVAAPKSSSKKEEDLDPSQYFENRSRT 82

Query: 315 KVEV 326
            +E+
Sbjct: 83  IMEL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,548
Number of Sequences: 5004
Number of extensions: 54532
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)