Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0081
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       31   0.009
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +3

Query: 93  DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEAD 272
           +D  T +E+ GRG+ + +G          RGR     + KD   ++D E     N+   D
Sbjct: 69  NDKKTDIEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQ---D 125

Query: 273 QKVPRKKRESRAR 311
            +  R+K+   AR
Sbjct: 126 NRNDRRKKTFAAR 138


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 223 LAESFVLVAAGGRPRFLSSFD 161
           +A +F+L    G PR +SSFD
Sbjct: 328 MAVAFMLSHPFGTPRIMSSFD 348


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 742 NPPQNYSCKDIATHSSYIIL 683
           NP  NYS     +H+ Y +L
Sbjct: 184 NPTANYSASTTLSHAEYSML 203


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 194 WRPTSFFK 171
           WRP SFFK
Sbjct: 119 WRPDSFFK 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,816
Number of Sequences: 438
Number of extensions: 3760
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)