Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0079
(271 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 65 1e-12
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 65 1e-12
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 1.4
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 24 3.2
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 24 4.3
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 23 5.7
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 23 7.5
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 7.5
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 23 7.5
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 23 7.5
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi... 23 7.5
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 23 7.5
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 23 7.5
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 23 7.5
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 23 9.9
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 23 9.9
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 23 9.9
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 65.3 bits (152), Expect = 1e-12
Identities = 28/48 (58%), Positives = 35/48 (72%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKXY 167
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ Y
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGY 48
Score = 40.7 bits (91), Expect = 3e-05
Identities = 19/33 (57%), Positives = 21/33 (63%)
Frame = +1
Query: 169 VXRVAGGNDKQGFPMKQGVLTNSRVASSESKGH 267
V ++ GGNDKQGFPM QGVL RV GH
Sbjct: 49 VFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGH 81
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 65.3 bits (152), Expect = 1e-12
Identities = 28/48 (58%), Positives = 35/48 (72%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKXY 167
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ Y
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGY 48
Score = 40.7 bits (91), Expect = 3e-05
Identities = 19/33 (57%), Positives = 21/33 (63%)
Frame = +1
Query: 169 VXRVAGGNDKQGFPMKQGVLTNSRVASSESKGH 267
V ++ GGNDKQGFPM QGVL RV GH
Sbjct: 49 VFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGH 81
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 44 PGNGMPEVVRSGGRAQASXLLR 109
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 3.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 20 SHEVKRFVPGNGMPEV 67
SH ++R++P N PEV
Sbjct: 553 SHHLQRYIPKNWFPEV 568
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 23.8 bits (49), Expect = 4.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 93 ACARPPLRTTSGIPLPGTKRLTS*LRSIPSN 1
A PP T S IP GT+ L + P N
Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQN 397
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 23.4 bits (48), Expect = 5.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 3 STGLTAVMKLNVSYPATGCQKLFE 74
S+ T V+K N YP T C K E
Sbjct: 59 SSNSTFVVKCNRQYPCTRCLKYGE 82
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.0 bits (47), Expect = 7.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 60 QKLFEVVDEHKLRIFYE 110
Q +FE+++ H +IF+E
Sbjct: 1225 QTIFEMIESHLSKIFFE 1241
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 23.0 bits (47), Expect = 7.5
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -1
Query: 94 SLCSSTTSNNFWHPVAGYETF 32
+LC++TTS++ + +A Y +
Sbjct: 279 ALCNATTSSSLFRQIASYGVY 299
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 259 LTQKTQHGCLSGPPVSSGI 203
L + T CLSG P+ +G+
Sbjct: 557 LLESTYRWCLSGTPMQNGV 575
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 252 RRRNTAVCQDPLFH 211
R+ NT C+DPLF+
Sbjct: 508 RKWNTLKCKDPLFY 521
>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
L34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 23.0 bits (47), Expect = 7.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 136 LIS*AMNGRXMVXRVAGGNDKQGFPMK 216
L+ AM G + +AGG +GFP +
Sbjct: 10 LLHPAMKGARNISILAGGGTMRGFPTR 36
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 23.0 bits (47), Expect = 7.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 76 TSNNFWHPVAGYE 38
T++ FWHP YE
Sbjct: 258 TTHLFWHPYGSYE 270
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 23.0 bits (47), Expect = 7.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 87 ARPPLRTTSGIPLPGTKRLT 28
+RP R + GIP+PG + T
Sbjct: 231 SRPKQRLSWGIPVPGNSQQT 250
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 23.0 bits (47), Expect = 7.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 183 WRQRQARIPDETGGPDKQPCCV 248
W +R ARIP + G + C V
Sbjct: 124 WVERVARIPVDQSGEEPDVCIV 145
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 269 EWPFDSEDATRLFVRTP-CFIGNPCLSLPPATRXT 168
++P + RL +R F+ NP L +PP+ T
Sbjct: 633 DFPLMPAEPIRLLLRPRNFFLRNPALDVPPSKNVT 667
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 22.6 bits (46), Expect = 9.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 246 RNTAVCQDPLFHRESLLVVAASDTXYHXPSIH 151
++TAVCQ E LL A+ H S+H
Sbjct: 219 QHTAVCQLAFSPDELLLACASKKETLHIFSLH 250
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 54 GCQKLFEVVDEHKLRIFY 107
G KLF+ V EH L +F+
Sbjct: 344 GTLKLFDFVKEHVLDVFH 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,004,686
Number of Sequences: 5004
Number of extensions: 15045
Number of successful extensions: 51
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -