Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0079
(271 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 63 3e-11
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 62 8e-11
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529... 30 0.22
04_04_0017 + 22176759-22177406 28 0.89
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 1.6
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 26 3.6
09_01_0050 + 853712-855368,855440-856113 26 3.6
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748... 26 4.7
10_08_0358 - 17162348-17162368,17162532-17163077 25 6.3
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 25 6.3
10_06_0114 - 10911713-10911724,10913642-10913772,10913869-109142... 25 8.3
01_06_0887 + 32733300-32734565 25 8.3
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 63.3 bits (147), Expect = 3e-11
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKXY 167
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+K Y
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGY 48
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 169 VXRVAGGNDKQGFPMKQGVLTNSRV 243
V ++ GG DKQGFPMKQGVLT+ RV
Sbjct: 49 VFKIMGGCDKQGFPMKQGVLTSGRV 73
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 61.7 bits (143), Expect = 8e-11
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKXY 167
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+K Y
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGY 48
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1
Query: 169 VXRVAGGNDKQGFPMKQGVLTNSRV 243
V ++ GG DKQGFPMKQGVLT RV
Sbjct: 49 VFKIMGGCDKQGFPMKQGVLTAGRV 73
>03_02_0055 -
5295466-5295476,5295519-5296635,5296760-5296855,
5297097-5297263,5297345-5297519,5297521-5297699,
5298004-5298109
Length = 616
Score = 30.3 bits (65), Expect = 0.22
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 81 DEHKLRIFYEKRMGAEVEADQLG------DEWKXYGXSCRWRQRQARIPDETGGPDKQP 239
D+ K IF+E + AEV A+ + DEWK + ++R ++ GPD +P
Sbjct: 200 DDGKGDIFFETNVTAEVMAEGMALQPFSFDEWKGHRAESVKKERMKKVKITVVGPDGKP 258
>04_04_0017 + 22176759-22177406
Length = 215
Score = 28.3 bits (60), Expect = 0.89
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +3
Query: 72 EVVDEHKLRIFYEKRMGAEVEADQLGDEWKXYGXSCRWRQRQARIPD 212
EV D LRI E+R E GD W S RQ R+PD
Sbjct: 104 EVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPD 150
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 60 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 149
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 108 RKRXEACARPPLRTTSGIPLPGTKRL 31
R R RPP R++S +PLP R+
Sbjct: 251 RPRLSRRPRPPRRSSSPVPLPSPHRI 276
>09_01_0050 + 853712-855368,855440-856113
Length = 776
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 129 LRRPCAFRKRXEACARP---PLRTTSGIPLPGTKRLTS*LRSIPSN 1
++RP AF E C RP + + P+ GT R + +IP N
Sbjct: 267 VQRPTAFAGNAELCGRPLDSLCASAADPPINGTARSPPAIAAIPKN 312
>05_04_0367 -
20672776-20673550,20674097-20674320,20674626-20674843,
20675133-20676534
Length = 872
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 72 EVVDEHKLRIFYEKRMGAEVEADQLGDE 155
E+++E KLRI Y+K+ E D G E
Sbjct: 538 EIMEEEKLRITYDKQWKRLKELDDNGAE 565
>10_08_0358 - 17162348-17162368,17162532-17163077
Length = 188
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 192 VAASDTXYHXPSIHRLTDQPLLRRPCAFRKRXEACARPPLRTT 64
VA+S PS+ R D P RR A R+ A PL+ T
Sbjct: 125 VASSAAGGWLPSVRRFADLPPERREAALRRWSSARWLFPLKIT 167
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 60 QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKXYGXSCR 182
+KLFE + + + + + + V+ DQ + K + CR
Sbjct: 1265 RKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCR 1305
>10_06_0114 -
10911713-10911724,10913642-10913772,10913869-10914229,
10914339-10915081,10918916-10918964,10919063-10919334,
10919426-10919519,10919618-10920000,10920504-10920575,
10920656-10920778,10920875-10921048,10921115-10921579,
10921662-10921839
Length = 1018
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 162 PSIHRLTDQPLLRRPCAFRKRXEAC 88
P +HRL + +L RPC AC
Sbjct: 628 PELHRLVIKHMLHRPCGALNMNCAC 652
>01_06_0887 + 32733300-32734565
Length = 421
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 263 PFDSEDATRLFVRTPCFIGNPC 198
P + +DA L RT F+G PC
Sbjct: 300 PEEDDDAPSLDGRTMLFVGRPC 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,449,960
Number of Sequences: 37544
Number of extensions: 126501
Number of successful extensions: 344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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