Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0077
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.6  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   28   7.5  
SB_40993| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 265 DGNNEPYDDFRLPNGKICTSESEFGNAYRL 354
           D N E YD+F+ P G+   +  +F  A+RL
Sbjct: 31  DMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 271 NNEPYDDFRLPNGKICTSESEFGNAYRL 354
           N  P DDF + NG+   S+ EFG ++ L
Sbjct: 188 NGVPSDDFMMKNGRYARSDREFGKSWSL 215


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 265  DGNNEPYDDFRLPNGKICTSESEFGNAYRL 354
            D N E YD+F+ P G+   +  +F  A+RL
Sbjct: 1441 DMNGEQYDEFQSPTGEFLNNADQFQKAWRL 1470


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 50   LIELKENGQAILNGASKGFPIIKKDVFAFRQTSNRIGVGSLYG 178
            L+++K  G     G ++ F +++KD     QT   I  G +YG
Sbjct: 2826 LVQVKHIGNISATGTNQKFIVLRKDTLKGGQTYRLILTGRMYG 2868


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +1

Query: 271  NNEPYDDFRLPNGKICTSESEFGNAYRLARSCP-QVQAPEHSHHQLHDASLPPACEQVF- 444
            NNE +D+   PNGK   S  EF N++ +      Q+Q       +   +     C ++F 
Sbjct: 1817 NNEHHDEMTKPNGKHAGSLIEFVNSWEVTNDTKCQIQRYIKPKSKCPTSRYSSRCRELFK 1876

Query: 445  GGISPLRTLSLFMDMSPFRQA 507
               SPL       +  PF  A
Sbjct: 1877 DEHSPLAPFFNITNPRPFMLA 1897


>SB_40993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +2

Query: 266 TVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKXPNTPITSCTMHPSPPPA 433
           TV TS    SG + +R  LR ++  T  V    +  C     P  SCT   SPP A
Sbjct: 8   TVVTSSFQESGGIAQRYGLRFSNKRTG-VRIQRLPTCTPVTLPFISCTAVHSPPNA 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,535,109
Number of Sequences: 59808
Number of extensions: 561668
Number of successful extensions: 1868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1865
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)