Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0077
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    31   0.93 
AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z81052-5|CAB02876.1|  512|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    28   8.7  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   8.7  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   8.7  
AF040652-6|AAY55875.1|  149|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -1

Query: 632  RIRFGSTAREKAGQGQSCHSSSQITSFVXIFSGVCAGDGVNNACLKGDMSMNNDRVLSGD 453
            +IR       +A  G+SC SS Q  S     SG+C        C KG++   N       
Sbjct: 1295 QIRLDGKCENRAKMGESCKSSLQCISNSRCISGIC-------GCAKGELPDGNSCKKEVK 1347

Query: 452  IPPK 441
             PPK
Sbjct: 1348 KPPK 1351


>AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical
           protein F49F1.7 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
 Frame = +2

Query: 197 SKLEVCYIEANG-FYLGKLRVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHR 373
           S  E      NG   +G  R    T TT  T T+    E +   KA   T+T       +
Sbjct: 129 STKEASVTTTNGHLQIGTTRRLQATQTTKSTETT----ETTETTKAIKTTKTTETTKATK 184

Query: 374 CKXPNTPITSCTMHPSPPPANRS 442
              P+T + + T  P PP  + S
Sbjct: 185 TTTPSTTVKTTTTKPKPPCTDSS 207


>Z81052-5|CAB02876.1|  512|Caenorhabditis elegans Hypothetical
           protein D2023.6 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = +2

Query: 5   NGKPKALILEDKSGVLIELKENGQAILNGASKGFPIIKKDVFAFRQTSNRIGVGSLYGL 181
           NGK + ++L+   G+ + + ++ + + +       I+K D+   R+ ++++GVG LYGL
Sbjct: 328 NGKYEIVLLDH--GLYLNISDHIRKLYSDL--WLAILKPDLQEIRKVASQMGVGELYGL 382


>AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical
           protein K08A2.1 protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 345 VPSGPQLSTGASXRTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 476
           VP+ P +++ +     PSP A   PPPRL           +PV+
Sbjct: 262 VPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVL 305


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 266 TVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKXPNTPITSCTMHPSPPPAN 436
           T +T+   +S  L+  S+  + SS TRTV  +        +T I   T   +P P+N
Sbjct: 88  TFSTNEASSSTKLLSTSSTAEISSTTRTVSRSIKPETSTASTTIRPLTTTTTPAPSN 144


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 471 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 388
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 209 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 237


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 471 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 388
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 217 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 245


>AF040652-6|AAY55875.1|  149|Caenorhabditis elegans Hypothetical
           protein T05A8.8 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 112 HQKGCVRFPSNKQQNRCWLIVRSHGLLH 195
           +Q+G + F      + CWL+V S  L+H
Sbjct: 28  NQQGSMHFSQGLLPSSCWLVVPSSALIH 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,610,226
Number of Sequences: 27780
Number of extensions: 406416
Number of successful extensions: 1347
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)